diff --git a/.gitignore b/.gitignore
index ecf6be3..3f07002 100644
--- a/.gitignore
+++ b/.gitignore
@@ -68,7 +68,11 @@ target/
 
 # Project specific
 tests/dst/*
+tests/*_dst
 tests/test_logs/*
 !tests/**/.keepdir
 !tests/src_invalid/*
 !tests/src_valid/*
+pdfid.py
+# Plugins are pdfid stuff
+plugin_*
diff --git a/bin/filecheck.py b/bin/filecheck.py
index 91b494e..6513442 100644
--- a/bin/filecheck.py
+++ b/bin/filecheck.py
@@ -477,6 +477,7 @@ class KittenGroomerFileCheck(KittenGroomerBase):
 
     def process_dir(self, src_dir, dst_dir):
         """Main function coordinating file processing."""
+        self.logger.tree(src_dir)
         for srcpath in self.list_all_files(src_dir):
             dstpath = srcpath.replace(src_dir, dst_dir)
             # TODO: Can we clean up the way we handle relative_path?
@@ -509,12 +510,12 @@ class KittenGroomerFileCheck(KittenGroomerBase):
             file.make_dangerous('Archive bomb')
         else:
             tempdir_path = file.make_tempdir()
+            # TODO: double check we are properly escaping file.src_path
+            # otherwise we are running unvalidated user input directly in the shell
             command_str = '{} -p1 x "{}" -o"{}" -bd -aoa'
             unpack_command = command_str.format(SEVENZ_PATH,
                                                 file.src_path, tempdir_path)
             self._run_process(unpack_command)
-            # LOG: check that tree is working correctly here
-            self.logger.tree(tempdir_path)
             self.process_dir(tempdir_path, file.dst_path)
             self.safe_rmtree(tempdir_path)
         self.recursive_archive_depth -= 1
diff --git a/tests/dst/.keepdir b/tests/dst/.keepdir
deleted file mode 100644
index e69de29..0000000
diff --git a/tests/test_filecheck.py b/tests/test_filecheck.py
index f187523..f58152d 100644
--- a/tests/test_filecheck.py
+++ b/tests/test_filecheck.py
@@ -2,6 +2,7 @@
 # -*- coding: utf-8 -*-
 
 import os
+import shutil
 
 import pytest
 
@@ -20,25 +21,27 @@ skipif_nodeps = pytest.mark.skipif(NODEPS,
 class TestIntegration:
 
     @pytest.fixture
-    def src_valid(self):
+    def src_valid_path(self):
         return os.path.join(os.getcwd(), 'tests/src_valid')
 
     @pytest.fixture
-    def src_invalid(self):
+    def src_invalid_path(self):
         return os.path.join(os.getcwd(), 'tests/src_invalid')
 
     @pytest.fixture
     def dst(self):
         return os.path.join(os.getcwd(), 'tests/dst')
 
-    def test_filecheck(self, src_invalid, dst):
-        groomer = KittenGroomerFileCheck(src_invalid, dst, debug=True)
+    def test_filecheck_src_invalid(self, src_invalid_path):
+        dst_path = self.make_dst_dir_path(src_invalid_path)
+        groomer = KittenGroomerFileCheck(src_invalid_path, dst_path, debug=True)
         groomer.run()
         test_description = "filecheck_invalid"
         save_logs(groomer, test_description)
 
-    def test_filecheck_2(self, src_valid, dst):
-        groomer = KittenGroomerFileCheck(src_valid, dst, debug=True)
+    def test_filecheck_2(self, src_valid_path):
+        dst_path = self.make_dst_dir_path(src_valid_path)
+        groomer = KittenGroomerFileCheck(src_valid_path, dst_path, debug=True)
         groomer.run()
         test_description = "filecheck_valid"
         save_logs(groomer, test_description)
@@ -46,8 +49,18 @@ class TestIntegration:
     def test_processdir(self):
         pass
 
+    def test_handle_archives(self):
+        pass
+
+    def make_dst_dir_path(self, src_dir_path):
+        dst_path = src_dir_path + '_dst'
+        shutil.rmtree(dst_path, ignore_errors=True)
+        os.makedirs(dst_path, exist_ok=True)
+        return dst_path
+
 
 class TestFileHandling:
     def test_autorun(self):
         # Run on a single autorun file, confirm that it gets flagged as dangerous
+        # TODO: build out these and other methods for individual file cases
         pass