mirror of https://github.com/MISP/MISP
chg: [dashboard] Added COVID widgets to the default installation from widget-collections
- should be interesting enough for all at this point. We might remove it again once COVID-19 is finally gone from our livespull/5776/head
parent
ba921383ba
commit
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<?php
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class CsseCovidMapWidget
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{
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public $title = 'CSSE Covid-19 map';
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public $render = 'WorldMap';
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public $width = 3;
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public $height = 4;
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public $params = array(
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'event_info' => 'World map based on the countries with infections.',
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'type' => 'Type of data used for the widget (confirmed, death, recovered).',
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'logarithmic' => 'Use a log10 scale for the graph (set via 0/1).'
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);
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public $description = 'Widget mapping the countries showing confirmed cases of COVID-19.';
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public $placeholder =
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'{
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"event_info": "%CSSE COVID-19 daily report%",
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"type": "confirmed",
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"logarithmic": 1
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}';
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public $countryCodes = array(
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'Afghanistan' => 'AF',
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'Albania' => 'AL',
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'Algeria' => 'DZ',
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'Angola' => 'AO',
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'Argentina' => 'AR',
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'Armenia' => 'AM',
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'Australia' => 'AU',
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'Austria' => 'AT',
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'Azerbaijan' => 'AZ',
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'Bahamas' => 'BS',
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'Bangladesh' => 'BD',
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'Belarus' => 'BY',
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'Belgium' => 'BE',
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'Belize' => 'BZ',
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'Benin' => 'BJ',
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'Bhutan' => 'BT',
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'Bolivia' => 'BO',
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'Bosnia and Herz.' => 'BA',
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'Botswana' => 'BW',
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'Brazil' => 'BR',
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'Brunei' => 'BN',
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'Bulgaria' => 'BG',
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'Burkina Faso' => 'BF',
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'Burundi' => 'BI',
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'Cambodia' => 'KH',
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'Cameroon' => 'CM',
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'Canada' => 'CA',
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'Central African Rep.' => 'CF',
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'Chad' => 'TD',
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'Chile' => 'CL',
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'China' => 'CN',
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'Colombia' => 'CO',
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'Congo' => 'CG',
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'Costa Rica' => 'CR',
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'Croatia' => 'HR',
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'Cuba' => 'CU',
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'Cyprus' => 'CY',
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'Czech Rep.' => 'CZ',
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'Côte d\'Ivoire' => 'CI',
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'Dem. Rep. Congo' => 'CD',
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'Dem. Rep. Korea' => 'KP',
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'Denmark' => 'DK',
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'Djibouti' => 'DJ',
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'Dominican Rep.' => 'DO',
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'Ecuador' => 'EC',
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'Egypt' => 'EG',
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'El Salvador' => 'SV',
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'Eq. Guinea' => 'GQ',
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'Eritrea' => 'ER',
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'Estonia' => 'EE',
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'Ethiopia' => 'ET',
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'Falkland Is.' => 'FK',
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'Fiji' => 'FJ',
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'Finland' => 'FI',
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'Fr. S. Antarctic Lands' => 'TF',
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'France' => 'FR',
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'Gabon' => 'GA',
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'Gambia' => 'GM',
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'Georgia' => 'GE',
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'Germany' => 'DE',
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'Ghana' => 'GH',
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'Greece' => 'GR',
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'Greenland' => 'GL',
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'Guatemala' => 'GT',
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'Guinea' => 'GN',
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'Guinea-Bissau' => 'GW',
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'Guyana' => 'GY',
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'Haiti' => 'HT',
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'Honduras' => 'HN',
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'Hungary' => 'HU',
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'Iceland' => 'IS',
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'India' => 'IN',
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'Indonesia' => 'ID',
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'Iran' => 'IR',
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'Iraq' => 'IQ',
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'Ireland' => 'IE',
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'Israel' => 'IL',
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'Italy' => 'IT',
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'Jamaica' => 'JM',
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'Japan' => 'JP',
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'Jordan' => 'JO',
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'Kazakhstan' => 'KZ',
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'Kenya' => 'KE',
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'Korea' => 'KR',
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'Kuwait' => 'KW',
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'Kyrgyzstan' => 'KG',
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'Lao PDR' => 'LA',
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'Latvia' => 'LV',
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'Lebanon' => 'LB',
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'Lesotho' => 'LS',
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'Liberia' => 'LR',
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'Libya' => 'LY',
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'Lithuania' => 'LT',
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'Luxembourg' => 'LU',
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'Macedonia' => 'MK',
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'Madagascar' => 'MG',
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'Mainland China' => 'CN',
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'Malawi' => 'MW',
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'Malaysia' => 'MY',
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'Mali' => 'ML',
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'Mauritania' => 'MR',
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'Mexico' => 'MX',
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'Moldova' => 'MD',
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'Mongolia' => 'MN',
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'Montenegro' => 'ME',
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'Morocco' => 'MA',
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'Mozamb' => 'MZ',
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'Myanmar' => 'MM',
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'Namibia' => 'NA',
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'Nepal' => 'NP',
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'Netherlands' => 'NL',
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'New Caledonia' => 'NC',
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'New Zealand' => 'NZ',
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'Nicaragua' => 'NI',
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'Niger' => 'NE',
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'Nigeria' => 'NG',
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'Norway' => 'NO',
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'Oman' => 'OM',
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'Pakistan' => 'PK',
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'Palestine' => 'PS',
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'Panama' => 'PA',
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'Papua New Guinea' => 'PG',
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'Paraguay' => 'PY',
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'Peru' => 'PE',
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'Philippines' => 'PH',
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'Poland' => 'PL',
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'Portugal' => 'PT',
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'Puerto Rico' => 'PR',
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'Qatar' => 'QA',
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'Romania' => 'RO',
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'Russia' => 'RU',
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'Rwanda' => 'RW',
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'S. Sudan' => 'SS',
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'Saudi Arabia' => 'SA',
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'Senegal' => 'SN',
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'Serbia' => 'RS',
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'Sierra Leone' => 'SL',
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'Slovakia' => 'SK',
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'Slovenia' => 'SI',
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'Solomon Is.' => 'SB',
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'Somalia' => 'SO',
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'South Africa' => 'ZA',
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'Spain' => 'ES',
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'Sri Lanka' => 'LK',
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'Sudan' => 'SD',
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'Suriname' => 'SR',
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'Swaziland' => 'SZ',
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'Sweden' => 'SE',
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'Switzerland' => 'CH',
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'Syria' => 'SY',
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'Taiwan' => 'TW',
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'Tajikistan' => 'TJ',
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'Tanzania' => 'TZ',
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'Thailand' => 'TH',
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'Timor-Leste' => 'TL',
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'Togo' => 'TG',
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'Trinidad and Tobago' => 'TT',
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'Tunisia' => 'TN',
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'Turkey' => 'TR',
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'Turkmenistan' => 'TM',
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'Uganda' => 'UG',
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'Ukraine' => 'UA',
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'United Arab Emirates' => 'AE',
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'United Kingdom' => 'GB',
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'United States' => 'US',
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'Uruguay' => 'UY',
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'Uzbekistan' => 'UZ',
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'Vanuatu' => 'VU',
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'Venezuela' => 'VE',
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'Vietnam' => 'VN',
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'W. Sahara' => 'EH',
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'Yemen' => 'YE',
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'Zambia' => 'ZM',
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'Zimbabwe' => 'ZW'
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);
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public $countryCodesReversed = array();
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public function handler($user, $options = array())
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{
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$this->countryCodesReversed = array_flip($this->countryCodes);
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$this->Event = ClassRegistry::init('Event');
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$event_info_condition = empty($options['event_info']) ? '%CSSE COVID-19 daily report%' : $options['event_info'];
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$params = array(
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'eventinfo' => $event_info_condition,
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'order' => 'date desc',
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'limit' => 1,
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'page' => 1
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);
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$eventIds = $this->Event->filterEventIds($user, $params);
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$params['eventid'] = $eventIds;
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$data = array();
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if (empty($options['type'])) {
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$options['type'] = 'confirmed';
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}
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if (!empty($eventIds)) {
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$events = $this->Event->fetchEvent($user, $params);
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$data = $this->__handleEvents($events, $options);
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arsort($data);
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}
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$data = array('data' => $data);
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if (!empty($options['type']) && $options['type'] === 'mortality') {
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$data['output_decorator'] = 'percentage';
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}
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if (!empty($options['logarithmic'])) {
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$data['logarithmic'] = array();
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foreach ($data['data'] as $k => $v) {
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if ($v == 0) {
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$value = 0;
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} else if ($v <= 1) {
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$value = 0.2;
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} else {
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$value = log10($v);
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}
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$data['logarithmic'][$k] = $value;
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}
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}
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$data['scope'] = Inflector::humanize($options['type']);
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$data['colour_scale'] = json_encode(array('#F08080', '#8B0000'), true);
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return $data;
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}
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private function __handleEvents($events, $options)
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{
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$data = array();
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if (!empty($events)) {
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foreach ($events as $event) {
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if (!empty($event['Object'])) {
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$data = $this->__handleObjects($data, $event['Object'], $options);
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}
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}
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}
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return $data;
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}
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private function __handleObjects($data, $objects, $options)
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{
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foreach ($objects as $object) {
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if ($object['name'] === 'covid19-csse-daily-report') {
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$temp = $this->__interpretObject($object);
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$data = $this->__rearrangeResults($data, $temp, $options);
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}
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}
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if ($options['type'] === 'mortality') {
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foreach ($data as $k => $v) {
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$data[$k] = round(100 * (empty($v['death']) ? 0 : $v['death']) / $v['confirmed'], 2);
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}
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}
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return $data;
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}
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private function __rearrangeResults($data, $temp, $options)
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{
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$country = $temp['country-region'];
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$type = $options['type'];
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if (!empty($temp[$type])) {
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$data[$country] = (empty($data[$country]) ? $temp[$type] : ($data[$country] + $temp[$type]));
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}
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return $data;
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}
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private function __interpretObject($object)
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{
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$temp = array();
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$validFields = array('country-region', 'confirmed', 'death', 'recovered');
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foreach ($object['Attribute'] as $attribute) {
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if (in_array($attribute['object_relation'], $validFields)) {
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if ($attribute['object_relation'] === 'country-region') {
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if (!empty($this->countryCodes[$attribute['value']])) {
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$temp[$attribute['object_relation']] = $this->countryCodes[$attribute['value']];
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} elseif (isset($this->countryCodesReversed[$attribute['value']])) {
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$temp[$attribute['object_relation']] = $attribute['value'];
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} else {
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$temp[$attribute['object_relation']] = 'XX';
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}
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} else {
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$attribute['value'] = intval($attribute['value']);
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$temp[$attribute['object_relation']] = $attribute['value'];
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}
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}
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}
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return $temp;
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}
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}
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@ -0,0 +1,201 @@
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<?php
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class CsseCovidTrendsWidget
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{
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public $title = 'CSSE Covid-19 trends';
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public $render = 'MultiLineChart';
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public $width = 4;
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public $height = 5;
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public $params = array(
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'event_info' => 'Substring included in the info field of relevant CSSE COVID-19 events.',
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'type' => 'Type of data used for the widget - confirmed (default), death, recovered, mortality.',
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'insight' => 'Insight type - raw (default), growth, percent.',
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'countries' => 'List of countries to be included (using the names used by the reports, such as Belgium, US, Germany).',
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'timeframe' => 'Timeframe for events taken into account in days (going back from now, using the date field, default 10).'
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);
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public $description = 'Widget showing line charts for the evolution of the various case types.';
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public $placeholder =
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'{
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"event_info": "%CSSE COVID-19 daily report%",
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"type": "confirmed",
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"insight": "growth",
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"countries": ["Luxembourg", "Germany", "Belgium", "France"],
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"timeframe": 20
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}';
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//public $cacheLifetime = 600;
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public $autoRefreshDelay = false;
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private $__countries = array();
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public function handler($user, $options = array())
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{
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$this->Event = ClassRegistry::init('Event');
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if (!isset($options['insight']) || !isset($this->__insightFunctions[$options['insight']])) {
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$options['Insight'] = 'calculate_growth_rate';
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}
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if (empty($options['timeframe'])) {
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$options['timeframe'] = 10;
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}
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if (empty($options['countries'])) {
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$options['countries'] = array("Luxembourg", "Germany", "Belgium", "France");
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}
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if (empty($options['insight'])) {
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$options['insight'] = 'raw';
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}
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$event_info_condition = empty($options['event_info']) ? '%CSSE COVID-19 daily report%' : $options['event_info'];
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$params = array(
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'eventinfo' => $event_info_condition,
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'order' => 'date desc',
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'date' => (empty($options['timeframe']) ? 10 : $options['timeframe']) . 'd'
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);
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$eventIds = $this->Event->filterEventIds($user, $params);
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$eventIds = array_reverse(array_values($eventIds));
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$data = array();
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if (empty($options['type'])) {
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$options['type'] = 'confirmed';
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}
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if (!empty($eventIds)) {
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$previous = false;
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foreach ($eventIds as $eventId) {
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$params = array('eventid' => $eventId);
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$event = $this->Event->fetchEvent($user, $params);
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if (!empty($event)) {
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$data[$event[0]['Event']['date']] = $this->__handleEvent($event[0], $options, $previous);
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}
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$previous = $data[$event[0]['Event']['date']];
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}
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}
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$startDate = date('Y-m-d', strtotime('-' . intval($options['timeframe']) . ' days'));
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//$data = call_user_func_array((array($this, $this->__insightFunctions[$options['Insight']]), array($startDate));
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$data = array('data' => $data);
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$data['insight'] = empty($options['insight']) ? 'raw' : $options['insight'];
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foreach ($data['data'] as $date => $day) {
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$data['data'][$date]['date'] = $date;
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foreach ($this->__countries as $country => $temp) {
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if (empty($data['data'][$date][$country][$data['insight']])) {
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$data['data'][$date][$country][$data['insight']] = 0;
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}
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}
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}
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$data['data'] = array_values($data['data']);
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$formulaData = array(
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'insight' => array(
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'raw' => '',
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'growth' => 'daily increase in ',
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'percent' => 'percentage wise daily increase in '
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),
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'type' => array(
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'confirmed' => 'confirmed cases',
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'death' => 'mortalities',
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'recovered' => 'recoveries',
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'mortality' => 'mortality rate'
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)
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);
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$data['formula'] = sprintf(
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'%s%s',
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(isset($options['insight']) && !empty($formulaData[$options['insight']])) ?
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$formulaData['insight'][$options['insight']] :
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$formulaData['insight']['raw'],
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(isset($options['type']) && !empty($formulaData['type'][$options['type']])) ?
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$formulaData['type'][$options['type']] :
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$formulaData['type']['confirmed']
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);
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$data['formula'] = ucfirst($data['formula']);
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foreach ($data['data'] as &$day) {
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foreach ($day as $key => &$countryData) {
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if ($key !== 'date') {
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$countryData = $countryData[$options['insight']];
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}
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}
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}
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return $data;
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}
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private function __handleEvent($event, $options, $previous)
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{
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$data = array();
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if (!empty($event['Object'])) {
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$data = $this->__handleObjects($data, $event['Object'], $options, $previous);
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}
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$data['date'] = $event['Event']['date'];
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return $data;
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}
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private function __handleObjects($data, $objects, $options, $previous)
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{
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foreach ($objects as $object) {
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if ($object['name'] === 'covid19-csse-daily-report') {
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$temp = $this->__interpretObject($object, $previous);
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$data = $this->__rearrangeResults($data, $temp, $options, $previous);
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}
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}
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if ($options['type'] === 'mortality') {
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foreach ($data as $k => $v) {
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$data[$k]['mortality'] = round(100 * (empty($v['death']) ? 0 : $v['death']) / $v['confirmed'], 2);
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}
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}
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if (!empty($options['insight']) && $options['insight'] !== 'raw') {
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if ($options['insight'] == 'growth') {
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foreach ($data as $k => &$countryData) {
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foreach ($countryData as $type => &$value) {
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if (empty($previous[$k][$type])) {
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$previous[$k][$type] = 0;
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}
|
||||
$data[$k]['growth'] = $data[$k][$type] - $previous[$k][$type];
|
||||
}
|
||||
}
|
||||
} else if ($options['insight'] == 'percent') {
|
||||
foreach ($data as $k => &$countryData) {
|
||||
foreach ($countryData as $type => &$value) {
|
||||
if (empty($previous[$k][$type])) {
|
||||
$previous[$k][$type] = $data[$k][$type];
|
||||
}
|
||||
$data[$k]['percent'] = ($data[$k][$type] - $previous[$k][$type]) / $previous[$k][$type];
|
||||
}
|
||||
}
|
||||
}
|
||||
} else {
|
||||
foreach ($data as $k => &$countryData) {
|
||||
$data[$k]['raw'] = $data[$k][$options['type']];
|
||||
}
|
||||
}
|
||||
return $data;
|
||||
}
|
||||
|
||||
private function __rearrangeResults($data, $temp, $options, $previous)
|
||||
{
|
||||
$country = $temp['country-region'];
|
||||
if (!in_array($country, $options['countries'])) {
|
||||
return $data;
|
||||
}
|
||||
$this->__countries[$country] = 1;
|
||||
if ($options['type'] === 'mortality') {
|
||||
foreach (array('confirmed', 'death') as $type) {
|
||||
if (!empty($temp[$type])) {
|
||||
$data[$country][$type] = (empty($data[$country][$type]) ? $temp[$type] : ($data[$country][$type] + $temp[$type]));
|
||||
}
|
||||
}
|
||||
} else {
|
||||
$type = $options['type'];
|
||||
if (!empty($temp[$type])) {
|
||||
$data[$country][$type] = (empty($data[$country][$type]) ? $temp[$type] : ($data[$country][$type] + $temp[$type]));
|
||||
}
|
||||
}
|
||||
return $data;
|
||||
}
|
||||
|
||||
private function __interpretObject($object, $previous)
|
||||
{
|
||||
$temp = array();
|
||||
$validFields = array('country-region', 'confirmed', 'death', 'recovered');
|
||||
foreach ($object['Attribute'] as $attribute) {
|
||||
if (in_array($attribute['object_relation'], $validFields)) {
|
||||
if ($attribute['object_relation'] !== 'country-region') {
|
||||
$attribute['value'] = intval($attribute['value']);
|
||||
}
|
||||
$temp[$attribute['object_relation']] = $attribute['value'];
|
||||
}
|
||||
}
|
||||
return $temp;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,182 @@
|
|||
<?php
|
||||
|
||||
class CsseCovidWidget
|
||||
{
|
||||
public $title = 'CSSE Covid-19 data';
|
||||
public $render = 'BarChart';
|
||||
public $width = 3;
|
||||
public $height = 4;
|
||||
public $params = array(
|
||||
'event_info' => 'Substring included in the info field of relevant CSSE COVID-19 events.',
|
||||
'type' => 'Type of data used for the widget (confirmed, death, recovered, mortality).',
|
||||
'logarithmic' => 'Use a log10 scale for the graph (set via 0/1).',
|
||||
'relative' => 'Take the country\'s population size into account (count / 10M)'
|
||||
);
|
||||
public $description = 'Widget visualising the countries ranked by highest count in the chosen category.';
|
||||
public $placeholder =
|
||||
'{
|
||||
"event_info": "%CSSE COVID-19 daily report%",
|
||||
"type": "confirmed",
|
||||
"logarithmic": 1,
|
||||
"relative": 0
|
||||
}';
|
||||
|
||||
public $__nameReplacements = array(
|
||||
'US' => 'United States',
|
||||
'Cote d\'Ivoire' => 'Ivory Coast',
|
||||
'Holy See' => 'Vatican',
|
||||
'Congo (Kinshasa)' => 'Democratic Republic of Congo',
|
||||
'Taiwan*' => 'Taiwan',
|
||||
'Korea, South' => 'South Korea'
|
||||
);
|
||||
|
||||
|
||||
private $__populationData = array();
|
||||
|
||||
public function handler($user, $options = array())
|
||||
{
|
||||
$this->Event = ClassRegistry::init('Event');
|
||||
$event_info_condition = empty($options['event_info']) ? '%CSSE COVID-19 daily report%' : $options['event_info'];
|
||||
$params = array(
|
||||
'eventinfo' => $event_info_condition,
|
||||
'order' => 'date desc',
|
||||
'limit' => 1,
|
||||
'page' => 1
|
||||
);
|
||||
$eventIds = $this->Event->filterEventIds($user, $params);
|
||||
$params['eventid'] = $eventIds;
|
||||
$data = array();
|
||||
if (empty($options['type'])) {
|
||||
$options['type'] = 'confirmed';
|
||||
}
|
||||
if (!empty($eventIds)) {
|
||||
$events = $this->Event->fetchEvent($user, $params);
|
||||
$data = $this->__handleEvents($events, $options);
|
||||
arsort($data);
|
||||
}
|
||||
$data = array('data' => $data);
|
||||
if (!empty($options['type']) && $options['type'] === 'mortality') {
|
||||
$data['output_decorator'] = 'percentage';
|
||||
}
|
||||
if ($options['type'] !== 'mortality' && !empty($options['relative'])) {
|
||||
$this->__getPopulationData();
|
||||
if (!empty($this->__populationData)) {
|
||||
foreach ($data['data'] as $country => $value) {
|
||||
if (isset($this->__nameReplacements[$country])) {
|
||||
$alias = $this->__nameReplacements[$country];
|
||||
} else {
|
||||
$alias = $country;
|
||||
}
|
||||
if (empty($this->__populationData[$alias])) {
|
||||
unset($data['data'][$country]);
|
||||
} else {
|
||||
$pre = $data['data'][$country];
|
||||
$data['data'][$country] = round(10000000 * $data['data'][$country] / $this->__populationData[$alias]);
|
||||
}
|
||||
}
|
||||
}
|
||||
arsort($data['data']);
|
||||
}
|
||||
if (!empty($options['logarithmic'])) {
|
||||
$data['logarithmic'] = array();
|
||||
foreach ($data['data'] as $k => $v) {
|
||||
if ($v == 0) {
|
||||
$value = 0;
|
||||
} else if ($v <= 1) {
|
||||
$value = 0.2;
|
||||
} else {
|
||||
$value = log10($v);
|
||||
}
|
||||
$data['logarithmic'][$k] = $value;
|
||||
}
|
||||
}
|
||||
return $data;
|
||||
}
|
||||
|
||||
private function __getPopulationData()
|
||||
{
|
||||
$this->Galaxy = ClassRegistry::init('Galaxy');
|
||||
$galaxy = $this->Galaxy->find('first', array(
|
||||
'recursive' => -1,
|
||||
'contain' => array('GalaxyCluster' => array('GalaxyElement')),
|
||||
'conditions' => array('Galaxy.name' => 'Country')
|
||||
));
|
||||
if (empty($galaxy)) {
|
||||
return false;
|
||||
}
|
||||
foreach ($galaxy['GalaxyCluster'] as $cluster) {
|
||||
foreach ($cluster['GalaxyElement'] as $element) {
|
||||
if ($element['key'] === 'Population') {
|
||||
$this->__populationData[$cluster['description']] = $element['value'];
|
||||
}
|
||||
}
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
private function __handleEvents($events, $options)
|
||||
{
|
||||
$data = array();
|
||||
if (!empty($events)) {
|
||||
foreach ($events as $event) {
|
||||
if (!empty($event['Object'])) {
|
||||
$data = $this->__handleObjects($data, $event['Object'], $options);
|
||||
}
|
||||
}
|
||||
}
|
||||
return $data;
|
||||
}
|
||||
|
||||
private function __handleObjects($data, $objects, $options)
|
||||
{
|
||||
foreach ($objects as $object) {
|
||||
if ($object['name'] === 'covid19-csse-daily-report') {
|
||||
$temp = $this->__interpretObject($object);
|
||||
$data = $this->__rearrangeResults($data, $temp, $options);
|
||||
}
|
||||
}
|
||||
if ($options['type'] === 'mortality') {
|
||||
foreach ($data as $k => $v) {
|
||||
if (!isset($v['death']) || empty($v['confirmed'])) {
|
||||
unset($data[$k]);
|
||||
continue;
|
||||
}
|
||||
$data[$k] = round(100 * (empty($v['death']) ? 0 : $v['death']) / $v['confirmed'], 2);
|
||||
}
|
||||
}
|
||||
return $data;
|
||||
}
|
||||
|
||||
private function __rearrangeResults($data, $temp, $options)
|
||||
{
|
||||
$country = $temp['country-region'];
|
||||
if ($options['type'] === 'mortality') {
|
||||
foreach (array('confirmed', 'death') as $type) {
|
||||
if (!empty($temp[$type])) {
|
||||
$data[$country][$type] = (empty($data[$country][$type]) ? $temp[$type] : ($data[$country][$type] + $temp[$type]));
|
||||
}
|
||||
}
|
||||
} else {
|
||||
$type = $options['type'];
|
||||
if (!empty($temp[$type])) {
|
||||
$data[$country] = (empty($data[$country]) ? $temp[$type] : ($data[$country] + $temp[$type]));
|
||||
}
|
||||
}
|
||||
return $data;
|
||||
}
|
||||
|
||||
private function __interpretObject($object)
|
||||
{
|
||||
$temp = array();
|
||||
$validFields = array('country-region', 'confirmed', 'death', 'recovered');
|
||||
foreach ($object['Attribute'] as $attribute) {
|
||||
if (in_array($attribute['object_relation'], $validFields)) {
|
||||
if ($attribute['object_relation'] !== 'country-region') {
|
||||
$attribute['value'] = intval($attribute['value']);
|
||||
}
|
||||
$temp[$attribute['object_relation']] = $attribute['value'];
|
||||
}
|
||||
}
|
||||
return $temp;
|
||||
}
|
||||
}
|
Loading…
Reference in New Issue