From 7be275acedc96564606866a0aad42754601114a3 Mon Sep 17 00:00:00 2001
From: mokaddem <sami.mokaddem@circl.lu>
Date: Wed, 18 Dec 2019 16:21:13 +0100
Subject: [PATCH] chg: [diagnostic:DBIndexes] Cleanup, bug fix and updated
 db_schema

---
 app/Console/Command/AdminShell.php            |  2 +-
 app/Model/Server.php                          |  8 --
 .../healthElements/db_indexes_diagnostic.ctp  | 74 ++++++++++---------
 db_schema.json                                |  2 +-
 4 files changed, 41 insertions(+), 45 deletions(-)

diff --git a/app/Console/Command/AdminShell.php b/app/Console/Command/AdminShell.php
index 5511a846b..5cf3eabba 100644
--- a/app/Console/Command/AdminShell.php
+++ b/app/Console/Command/AdminShell.php
@@ -524,7 +524,7 @@ class AdminShell extends AppShell
             $dbVersion = $dbVersion['AdminSetting']['value'];
             $data = array(
                 'schema' => $dbActualSchema['schema'],
-                'indexes' => $dbActualSchema['indexes']
+                'indexes' => $dbActualSchema['indexes'],
                 'db_version' => $dbVersion
             );
             $file = new File(ROOT . DS . 'db_schema.json', true);
diff --git a/app/Model/Server.php b/app/Model/Server.php
index e6aa96d6f..ca8997eda 100644
--- a/app/Model/Server.php
+++ b/app/Model/Server.php
@@ -4640,14 +4640,6 @@ class Server extends AppModel
 
     public function compareDBIndexes($actualIndex, $expectedIndex)
     {
-        $expectedIndex = $actualIndex;
-        unset($actualIndex['decaying_models']);
-        unset($actualIndex['feeds'][0]);
-        unset($actualIndex['feeds'][1]);
-        unset($actualIndex['galaxy_reference'][0]);
-        unset($actualIndex['galaxy_reference'][3]);
-        unset($actualIndex['notification_logs'][1]);
-        unset($expectedIndex['threads'][2]);
         $indexDiff = array();
         foreach($expectedIndex as $tableName => $indexes) {
             if (!array_key_exists($tableName, $actualIndex)) {
diff --git a/app/View/Elements/healthElements/db_indexes_diagnostic.ctp b/app/View/Elements/healthElements/db_indexes_diagnostic.ctp
index c298ed43c..2ae549db5 100644
--- a/app/View/Elements/healthElements/db_indexes_diagnostic.ctp
+++ b/app/View/Elements/healthElements/db_indexes_diagnostic.ctp
@@ -9,44 +9,48 @@
         <strong><?php echo __('Notice'); ?></strong>
         <?php echo __('The highlighted issues may be benign. if you are unsure, please open an issue and ask for clarification.'); ?>
     </div>
-    <table id="tableDBIndexes" class="table table-condensed table-bordered">
-        <thead>
-            <tr>
-                <th>Table name</th>
-                <th>Column name</th>
-                <th>Indexed</th>
-                <th>Description</th>
-            </tr>
-        </thead>
-        <tbody>
-            <?php foreach($columnPerTable as $tableName => $columnArray): ?>
-                <?php 
-                    $columnCount = 0;
-                    $rowHtml = '';
-                ?>
-                <?php foreach($columnArray as $columnName): ?>
+    <?php if(empty($diagnostic)): ?>
+        <span class="label label-success"><?php echo __('Index diagnostic:'); ?><i class="fa fa-check"></i></span>
+    <?php else: ?>
+        <table id="tableDBIndexes" class="table table-condensed table-bordered">
+            <thead>
+                <tr>
+                    <th>Table name</th>
+                    <th>Column name</th>
+                    <th>Indexed</th>
+                    <th>Description</th>
+                </tr>
+            </thead>
+            <tbody>
+                <?php foreach($columnPerTable as $tableName => $columnArray): ?>
                     <?php 
-                        $columnIndexed = !empty($indexes[$tableName]) && in_array($columnName, $indexes[$tableName]);
-                        $warning = isset($diagnostic[$tableName][$columnName]);
-                        if ($warning) {
-                            $columnCount++;
-                        }
-                        $rowHtml .= sprintf('%s%s%s%s%s',
-                            sprintf('<tr class="%s">', $warning ? 'error' : 'indexInfo hidden'),
-                            sprintf('<td>%s</td>', h($columnName)),
-                            sprintf('<td><i class="bold fa %s"></i></td>', $columnIndexed ? 'green fa-check' : 'red fa-times'),
-                            sprintf('<td>%s</td>', $warning ? h($diagnostic[$tableName][$columnName]) : ''),
-                            '</tr>'
-                        );
+                        $columnCount = 0;
+                        $rowHtml = '';
                     ?>
+                    <?php foreach($columnArray as $columnName): ?>
+                        <?php 
+                            $columnIndexed = !empty($indexes[$tableName]) && in_array($columnName, $indexes[$tableName]);
+                            $warning = isset($diagnostic[$tableName][$columnName]);
+                            if ($warning) {
+                                $columnCount++;
+                            }
+                            $rowHtml .= sprintf('%s%s%s%s%s',
+                                sprintf('<tr class="%s">', $warning ? 'error' : 'indexInfo hidden'),
+                                sprintf('<td>%s</td>', h($columnName)),
+                                sprintf('<td><i class="bold fa %s"></i></td>', $columnIndexed ? 'green fa-check' : 'red fa-times'),
+                                sprintf('<td>%s</td>', $warning ? h($diagnostic[$tableName][$columnName]) : ''),
+                                '</tr>'
+                            );
+                        ?>
+                    <?php endforeach; ?>
+                    <?php if ($columnCount > 0): ?>
+                        <?php echo sprintf('<tr><td rowspan="%s" colspan="0" class="bold">%s</td></tr>', $columnCount+1, h($tableName)); ?>
+                        <?php echo $rowHtml; ?>
+                    <?php endif; ?>
                 <?php endforeach; ?>
-                <?php if ($columnCount > 0): ?>
-                    <?php echo sprintf('<tr><td rowspan="%s" colspan="0" class="bold">%s</td></tr>', $columnCount+1, h($tableName)); ?>
-                    <?php echo $rowHtml; ?>
-                <?php endif; ?>
-            <?php endforeach; ?>
-        </tbody>
-    </table>
+            </tbody>
+        </table>
+    <?php endif; ?>
 </div>
 
 <script>
diff --git a/db_schema.json b/db_schema.json
index f5300d791..2977ab44f 100644
--- a/db_schema.json
+++ b/db_schema.json
@@ -1 +1 @@
-{"schema":{"admin_settings":[{"column_name":"id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"setting","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"value","is_nullable":"NO","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_bin","column_default":null}],"attribute_tags":[{"column_name":"id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"attribute_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"event_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"tag_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"local","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"0"}],"attributes":[{"column_name":"id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"event_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"object_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":"0"},{"column_name":"object_relation","is_nullable":"YES","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"category","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"type","is_nullable":"NO","data_type":"varchar","character_maximum_length":"100","numeric_precision":null,"collation_name":"utf8_unicode_ci","column_default":null},{"column_name":"value1","is_nullable":"NO","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_unicode_ci","column_default":null},{"column_name":"value2","is_nullable":"NO","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_unicode_ci","column_default":null},{"column_name":"to_ids","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"1"},{"column_name":"uuid","is_nullable":"NO","data_type":"varchar","character_maximum_length":"40","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"timestamp","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":"0"},{"column_name":"distribution","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"0"},{"column_name":"sharing_group_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"comment","is_nullable":"YES","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"deleted","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"0"},{"column_name":"disable_correlation","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"0"}],"bruteforces":[{"column_name":"ip","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"username","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"expire","is_nullable":"NO","data_type":"datetime","character_maximum_length":null,"numeric_precision":null,"collation_name":null,"column_default":null}],"cake_sessions":[{"column_name":"id","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":""},{"column_name":"data","is_nullable":"NO","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"expires","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null}],"correlations":[{"column_name":"id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"value","is_nullable":"NO","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"1_event_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"1_attribute_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"event_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"attribute_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"org_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"distribution","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":null},{"column_name":"a_distribution","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":null},{"column_name":"sharing_group_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"a_sharing_group_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"date","is_nullable":"NO","data_type":"date","character_maximum_length":null,"numeric_precision":null,"collation_name":null,"column_default":null},{"column_name":"info","is_nullable":"NO","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_bin","column_default":null}],"decaying_model_mappings":[{"column_name":"id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"attribute_type","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"model_id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null}],"decaying_models":[{"column_name":"id","is_nullable":"NO","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"uuid","is_nullable":"YES","data_type":"varchar","character_maximum_length":"40","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"name","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"parameters","is_nullable":"YES","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_general_ci","column_default":null},{"column_name":"attribute_types","is_nullable":"YES","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_general_ci","column_default":null},{"column_name":"description","is_nullable":"YES","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_general_ci","column_default":null},{"column_name":"org_id","is_nullable":"YES","data_type":"int","character_maximum_length":null,"numeric_precision":"10","collation_name":null,"column_default":null},{"column_name":"enabled","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"0"},{"column_name":"all_orgs","is_nullable":"NO","data_type":"tinyint","character_maximum_length":null,"numeric_precision":"3","collation_name":null,"column_default":"1"},{"column_name":"ref","is_nullable":"YES","data_type":"text","character_maximum_length":"65535","numeric_precision":null,"collation_name":"utf8_unicode_ci","column_default":null},{"column_name":"formula","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"collation_name":"utf8_bin","column_default":null},{"column_name":"version","is_nullable":"NO","data_type":"varchar","character_maximum_length":"255","numeric_precision":null,"coll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