mirror of https://github.com/MISP/PyMISP
490 lines
20 KiB
Python
490 lines
20 KiB
Python
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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from dateutil.parser import parse
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import csv
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from pathlib import Path
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import json
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from uuid import uuid4
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import requests
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from pymisp import MISPEvent, MISPObject, MISPTag, MISPOrganisation
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from pymisp.tools import feed_meta_generator
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class Scrippts:
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def __init__(self, output_dir: str= 'output', org_name: str='CIRCL',
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org_uuid: str='55f6ea5e-2c60-40e5-964f-47a8950d210f'):
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self.misp_org = MISPOrganisation()
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self.misp_org.name = org_name
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self.misp_org.uuid = org_uuid
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self.output_dir = Path(output_dir)
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self.output_dir.mkdir(exist_ok=True)
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self.data_dir = self.output_dir / 'data'
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self.data_dir.mkdir(exist_ok=True)
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self.scrippts_meta_file = self.output_dir / '.meta_scrippts'
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self.scrippts_meta = {}
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if self.scrippts_meta_file.exists():
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# Format: <infofield>,<uuid>.json
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with self.scrippts_meta_file.open() as f:
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reader = csv.reader(f)
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for row in reader:
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self.scrippts_meta[row[0]] = row[1]
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else:
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self.scrippts_meta_file.touch()
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def geolocation_alt(self) -> MISPObject:
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# Alert, NWT, Canada
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location = MISPObject('geolocation', standalone=False)
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location.add_attribute('latitude', 82.3)
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location.add_attribute('longitude', 62.3)
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location.add_attribute('altitude', 210)
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location.add_attribute('text', 'Alert, NWT, Canada')
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return location
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def tag_alt(self) -> MISPTag:
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:ALT'
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return tag
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def geolocation_ptb(self):
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# Point Barrow, Alaska
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 71.3)
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location.add_attribute('longitude', 156.6)
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location.add_attribute('altitude', 11)
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location.add_attribute('text', 'Point Barrow, Alaska')
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return location
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def tag_ptb(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:PTB'
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return tag
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def geolocation_stp(self) -> MISPObject:
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# Station P
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 50)
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location.add_attribute('longitude', 145)
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location.add_attribute('altitude', 0)
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location.add_attribute('text', 'Station P')
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return location
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def tag_stp(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:STP'
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return tag
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def geolocation_ljo(self) -> MISPObject:
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# La Jolla Pier, California
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 32.9)
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location.add_attribute('longitude', 117.3)
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location.add_attribute('altitude', 10)
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location.add_attribute('text', 'La Jolla Pier, California')
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return location
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def tag_ljo(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:LJO'
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return tag
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def geolocation_bcs(self) -> MISPObject:
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# Baja California Sur, Mexico
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 23.3)
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location.add_attribute('longitude', 110.2)
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location.add_attribute('altitude', 4)
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location.add_attribute('text', 'Baja California Sur, Mexico')
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return location
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def tag_bcs(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:BCS'
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return tag
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def geolocation_mlo(self) -> MISPObject:
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# Mauna Loa Observatory, Hawaii
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 19.5)
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location.add_attribute('longitude', 155.6)
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location.add_attribute('altitude', 3397)
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location.add_attribute('text', 'Mauna Loa Observatory, Hawaii')
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return location
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def tag_mlo(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:MLO'
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return tag
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def geolocation_kum(self) -> MISPObject:
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# Cape Kumukahi, Hawaii
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 19.5)
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location.add_attribute('longitude', 154.8)
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location.add_attribute('altitude', 3)
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location.add_attribute('text', 'Cape Kumukahi, Hawaii')
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return location
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def tag_kum(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:KUM'
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return tag
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def geolocation_chr(self):
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# Christmas Island, Fanning Island
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 2)
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location.add_attribute('longitude', 157.3)
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location.add_attribute('altitude', 2)
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location.add_attribute('text', 'Christmas Island, Fanning Island')
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return location
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def tag_chr(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:CHR'
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return tag
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def geolocation_sam(self):
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# American Samoa
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 14.2)
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location.add_attribute('longitude', 170.6)
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location.add_attribute('altitude', 30)
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location.add_attribute('text', 'American Samoa')
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return location
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def tag_sam(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:SAM'
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return tag
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def geolocation_ker(self):
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# Kermadec Islands, Raoul Island
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 29.2)
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location.add_attribute('longitude', 177.9)
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location.add_attribute('altitude', 2)
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location.add_attribute('text', 'Kermadec Islands, Raoul Island')
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return location
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def tag_ker(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:KER'
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return tag
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def geolocation_nzd(self):
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# Baring Head, New Zealand
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 41.4)
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location.add_attribute('longitude', 174.9)
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location.add_attribute('altitude', 85)
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location.add_attribute('text', 'Baring Head, New Zealand')
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return location
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def tag_nzd(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:NZD'
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return tag
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def geolocation_psa(self):
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# Palmer Station, Antarctica
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 64.9)
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location.add_attribute('longitude', 64)
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location.add_attribute('altitude', 10)
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location.add_attribute('text', 'Palmer Station, Antarctica')
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return location
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def tag_psa(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:PSA'
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return tag
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def geolocation_spo(self):
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# South Pole
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location = MISPObject('geolocation')
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location.add_attribute('latitude', 90)
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location.add_attribute('longitude', 0)
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location.add_attribute('altitude', 2810)
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location.add_attribute('text', 'South Pole')
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return location
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def tag_spo(self):
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tag = MISPTag()
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tag.name = 'scrippsco2-sampling-stations:SPO'
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return tag
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def fetch(self, url):
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filepath = self.data_dir / Path(url).name
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r = requests.get(url)
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if r.status_code != 200 or r.text[0] != '"':
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print(url)
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return False
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with filepath.open('w') as f:
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f.write(r.text)
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return filepath
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def import_all(self, stations_short_names, interval, data_type):
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object_creator = getattr(self, f'{interval}_flask_{data_type}')
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if data_type == 'co2':
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base_url = 'https://scrippsco2.ucsd.edu/assets/data/atmospheric/stations/flask_co2/'
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elif data_type in ['c13', 'o18']:
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base_url = 'https://scrippsco2.ucsd.edu/assets/data/atmospheric/stations/flask_isotopic/'
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for station in stations_short_names:
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url = f'{base_url}/{interval}/{interval}_flask_{data_type}_{station}.csv'
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infofield = f'[{station.upper()}] {interval} average atmospheric {data_type} concentrations'
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filepath = self.fetch(url)
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if not filepath:
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continue
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if infofield in self.scrippts_meta:
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event = MISPEvent()
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event.load_file(str(self.output_dir / self.scrippts_meta[infofield]))
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location = event.get_objects_by_name('geolocation')[0]
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update = True
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else:
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event = MISPEvent()
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event.uuid = str(uuid4())
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event.info = infofield
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event.Orgc = self.misp_org
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event.add_tag(getattr(self, f'tag_{station}')())
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location = getattr(self, f'geolocation_{station}')()
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event.add_object(location)
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event.add_attribute('link', f'https://scrippsco2.ucsd.edu/data/atmospheric_co2/{station}')
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update = False
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with self.scrippts_meta_file.open('a') as f:
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writer = csv.writer(f)
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writer.writerow([infofield, f'{event.uuid}.json'])
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object_creator(event, location, filepath, update)
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feed_output = event.to_feed(with_meta=False)
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with (self.output_dir / f'{event.uuid}.json').open('w') as f:
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# json.dump(feed_output, f, indent=2, sort_keys=True) # For testing
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json.dump(feed_output, f)
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def import_monthly_co2_all(self):
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to_import = ['alt', 'ptb', 'stp', 'ljo', 'bcs', 'mlo', 'kum', 'chr', 'sam', 'ker', 'nzd']
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self.import_all(to_import, 'monthly', 'co2')
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def import_monthly_c13_all(self):
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to_import = ['alt', 'ptb', 'stp', 'ljo', 'bcs', 'mlo', 'kum', 'chr', 'sam', 'ker', 'nzd', 'psa', 'spo']
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self.import_all(to_import, 'monthly', 'c13')
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def import_monthly_o18_all(self):
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to_import = ['alt', 'ptb', 'stp', 'ljo', 'bcs', 'mlo', 'kum', 'chr', 'sam', 'ker', 'nzd', 'spo']
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self.import_all(to_import, 'monthly', 'o18')
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def import_daily_co2_all(self):
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to_import = ['alt', 'ptb', 'stp', 'ljo', 'bcs', 'mlo', 'kum', 'chr', 'sam', 'ker', 'nzd']
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self.import_all(to_import, 'daily', 'co2')
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def import_daily_c13_all(self):
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to_import = ['alt', 'ptb', 'ljo', 'bcs', 'mlo', 'kum', 'chr', 'sam', 'ker', 'nzd', 'spo']
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self.import_all(to_import, 'daily', 'c13')
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def import_daily_o18_all(self):
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to_import = ['alt', 'ptb', 'ljo', 'bcs', 'mlo', 'kum', 'chr', 'sam', 'ker', 'nzd', 'spo']
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self.import_all(to_import, 'daily', 'o18')
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def split_data_comment(self, csv_file, update, event):
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comment = ''
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data = []
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with csv_file.open() as f:
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for line in f:
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if line[0] == '"':
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if update:
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continue
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if '----------' in line:
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event.add_attribute('comment', comment, disable_correlation=True)
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comment = ''
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continue
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comment += line[1:-1].strip()
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else:
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data.append(line)
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if not update:
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event.add_attribute('comment', comment, disable_correlation=True)
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return data
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def monthly_flask_co2(self, event, location, csv_file, update):
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data = self.split_data_comment(csv_file, update, event)
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dates_already_imported = []
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if update:
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# get all datetime from existing event
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for obj in event.get_objects_by_name('scrippsco2-co2-monthly'):
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date_attribute = obj.get_attributes_by_relation('sample-datetime')[0]
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dates_already_imported.append(date_attribute.value)
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reader = csv.reader(data)
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for row in reader:
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if not row[0].isdigit():
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# This file has fucked up headers
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continue
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sample_date = parse(f'{row[0]}-{row[1]}-16T00:00:00')
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if sample_date in dates_already_imported:
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continue
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obj = MISPObject('scrippsco2-co2-monthly', standalone=False)
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obj.add_attribute('sample-datetime', sample_date)
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obj.add_attribute('sample-date-excel', float(row[2]))
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obj.add_attribute('sample-date-fractional', float(row[3]))
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obj.add_attribute('monthly-co2', float(row[4]))
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obj.add_attribute('monthly-co2-seasonal-adjustment', float(row[5]))
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obj.add_attribute('monthly-co2-smoothed', float(row[6]))
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obj.add_attribute('monthly-co2-smoothed-seasonal-adjustment', float(row[7]))
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obj.add_reference(location, 'sampling-location')
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event.add_object(obj)
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def monthly_flask_c13(self, event, location, csv_file, update):
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data = self.split_data_comment(csv_file, update, event)
|
||
|
|
|
||
|
|
dates_already_imported = []
|
||
|
|
if update:
|
||
|
|
# get all datetime from existing event
|
||
|
|
for obj in event.get_objects_by_name('scrippsco2-c13-monthly'):
|
||
|
|
date_attribute = obj.get_attributes_by_relation('sample-datetime')[0]
|
||
|
|
dates_already_imported.append(date_attribute.value)
|
||
|
|
|
||
|
|
reader = csv.reader(data)
|
||
|
|
for row in reader:
|
||
|
|
if not row[0].isdigit():
|
||
|
|
# This file has fucked up headers
|
||
|
|
continue
|
||
|
|
sample_date = parse(f'{row[0]}-{row[1]}-16T00:00:00')
|
||
|
|
if sample_date in dates_already_imported:
|
||
|
|
continue
|
||
|
|
obj = MISPObject('scrippsco2-c13-monthly', standalone=False)
|
||
|
|
obj.add_attribute('sample-datetime', sample_date)
|
||
|
|
obj.add_attribute('sample-date-excel', float(row[2]))
|
||
|
|
obj.add_attribute('sample-date-fractional', float(row[3]))
|
||
|
|
obj.add_attribute('monthly-c13', float(row[4]))
|
||
|
|
obj.add_attribute('monthly-c13-seasonal-adjustment', float(row[5]))
|
||
|
|
obj.add_attribute('monthly-c13-smoothed', float(row[6]))
|
||
|
|
obj.add_attribute('monthly-c13-smoothed-seasonal-adjustment', float(row[7]))
|
||
|
|
obj.add_reference(location, 'sampling-location')
|
||
|
|
event.add_object(obj)
|
||
|
|
|
||
|
|
def monthly_flask_o18(self, event, location, csv_file, update):
|
||
|
|
data = self.split_data_comment(csv_file, update, event)
|
||
|
|
|
||
|
|
dates_already_imported = []
|
||
|
|
if update:
|
||
|
|
# get all datetime from existing event
|
||
|
|
for obj in event.get_objects_by_name('scrippsco2-o18-monthly'):
|
||
|
|
date_attribute = obj.get_attributes_by_relation('sample-datetime')[0]
|
||
|
|
dates_already_imported.append(date_attribute.value)
|
||
|
|
|
||
|
|
reader = csv.reader(data)
|
||
|
|
for row in reader:
|
||
|
|
if not row[0].isdigit():
|
||
|
|
# This file has fucked up headers
|
||
|
|
continue
|
||
|
|
sample_date = parse(f'{row[0]}-{row[1]}-16T00:00:00')
|
||
|
|
if sample_date in dates_already_imported:
|
||
|
|
continue
|
||
|
|
obj = MISPObject('scrippsco2-o18-monthly', standalone=False)
|
||
|
|
obj.add_attribute('sample-datetime', sample_date)
|
||
|
|
obj.add_attribute('sample-date-excel', float(row[2]))
|
||
|
|
obj.add_attribute('sample-date-fractional', float(row[3]))
|
||
|
|
obj.add_attribute('monthly-o18', float(row[4]))
|
||
|
|
obj.add_attribute('monthly-o18-seasonal-adjustment', float(row[5]))
|
||
|
|
obj.add_attribute('monthly-o18-smoothed', float(row[6]))
|
||
|
|
obj.add_attribute('monthly-o18-smoothed-seasonal-adjustment', float(row[7]))
|
||
|
|
obj.add_reference(location, 'sampling-location')
|
||
|
|
event.add_object(obj)
|
||
|
|
|
||
|
|
def daily_flask_co2(self, event, location, csv_file, update):
|
||
|
|
data = self.split_data_comment(csv_file, update, event)
|
||
|
|
|
||
|
|
dates_already_imported = []
|
||
|
|
if update:
|
||
|
|
# get all datetime from existing event
|
||
|
|
for obj in event.get_objects_by_name('scrippsco2-co2-daily'):
|
||
|
|
date_attribute = obj.get_attributes_by_relation('sample-datetime')[0]
|
||
|
|
dates_already_imported.append(date_attribute.value)
|
||
|
|
|
||
|
|
reader = csv.reader(data)
|
||
|
|
for row in reader:
|
||
|
|
sample_date = parse(f'{row[0]}-{row[1]}')
|
||
|
|
if sample_date in dates_already_imported:
|
||
|
|
continue
|
||
|
|
obj = MISPObject('scrippsco2-co2-daily', standalone=False)
|
||
|
|
obj.add_attribute('sample-datetime', sample_date)
|
||
|
|
obj.add_attribute('sample-date-excel', float(row[2]))
|
||
|
|
obj.add_attribute('sample-date-fractional', float(row[3]))
|
||
|
|
obj.add_attribute('number-flask', int(row[4]))
|
||
|
|
obj.add_attribute('flag', int(row[5]))
|
||
|
|
attr = obj.add_attribute('co2-value', float(row[6]))
|
||
|
|
attr.add_tag(f'scrippsco2-fgc:{int(row[5])}')
|
||
|
|
obj.add_reference(location, 'sampling-location')
|
||
|
|
event.add_object(obj)
|
||
|
|
|
||
|
|
def daily_flask_c13(self, event, location, csv_file, update):
|
||
|
|
data = self.split_data_comment(csv_file, update, event)
|
||
|
|
|
||
|
|
dates_already_imported = []
|
||
|
|
if update:
|
||
|
|
# get all datetime from existing event
|
||
|
|
for obj in event.get_objects_by_name('scrippsco2-c13-daily'):
|
||
|
|
date_attribute = obj.get_attributes_by_relation('sample-datetime')[0]
|
||
|
|
dates_already_imported.append(date_attribute.value)
|
||
|
|
|
||
|
|
reader = csv.reader(data)
|
||
|
|
for row in reader:
|
||
|
|
sample_date = parse(f'{row[0]}-{row[1]}')
|
||
|
|
if sample_date in dates_already_imported:
|
||
|
|
continue
|
||
|
|
obj = MISPObject('scrippsco2-c13-daily', standalone=False)
|
||
|
|
obj.add_attribute('sample-datetime', sample_date)
|
||
|
|
obj.add_attribute('sample-date-excel', float(row[2]))
|
||
|
|
obj.add_attribute('sample-date-fractional', float(row[3]))
|
||
|
|
obj.add_attribute('number-flask', int(row[4]))
|
||
|
|
obj.add_attribute('flag', int(row[5]))
|
||
|
|
attr = obj.add_attribute('c13-value', float(row[6]))
|
||
|
|
attr.add_tag(f'scrippsco2-fgi:{int(row[5])}')
|
||
|
|
obj.add_reference(location, 'sampling-location')
|
||
|
|
event.add_object(obj)
|
||
|
|
|
||
|
|
def daily_flask_o18(self, event, location, csv_file, update):
|
||
|
|
data = self.split_data_comment(csv_file, update, event)
|
||
|
|
|
||
|
|
dates_already_imported = []
|
||
|
|
if update:
|
||
|
|
# get all datetime from existing event
|
||
|
|
for obj in event.get_objects_by_name('scrippsco2-o18-daily'):
|
||
|
|
date_attribute = obj.get_attributes_by_relation('sample-datetime')[0]
|
||
|
|
dates_already_imported.append(date_attribute.value)
|
||
|
|
|
||
|
|
reader = csv.reader(data)
|
||
|
|
for row in reader:
|
||
|
|
sample_date = parse(f'{row[0]}-{row[1]}')
|
||
|
|
if sample_date in dates_already_imported:
|
||
|
|
continue
|
||
|
|
obj = MISPObject('scrippsco2-o18-daily', standalone=False)
|
||
|
|
obj.add_attribute('sample-datetime', sample_date)
|
||
|
|
obj.add_attribute('sample-date-excel', float(row[2]))
|
||
|
|
obj.add_attribute('sample-date-fractional', float(row[3]))
|
||
|
|
obj.add_attribute('number-flask', int(row[4]))
|
||
|
|
obj.add_attribute('flag', int(row[5]))
|
||
|
|
attr = obj.add_attribute('o18-value', float(row[6]))
|
||
|
|
attr.add_tag(f'scrippsco2-fgi:{int(row[5])}')
|
||
|
|
obj.add_reference(location, 'sampling-location')
|
||
|
|
event.add_object(obj)
|
||
|
|
|
||
|
|
|
||
|
|
if __name__ == '__main__':
|
||
|
|
output_dir = 'scrippsco2_feed'
|
||
|
|
|
||
|
|
i = Scrippts(output_dir=output_dir)
|
||
|
|
i.import_daily_co2_all()
|
||
|
|
i.import_daily_c13_all()
|
||
|
|
i.import_daily_o18_all()
|
||
|
|
i.import_monthly_co2_all()
|
||
|
|
i.import_monthly_c13_all()
|
||
|
|
i.import_monthly_o18_all()
|
||
|
|
|
||
|
|
feed_meta_generator(Path(output_dir))
|