From a151f4ff2e9c4a41fe0a1af30a5e37183a084ea9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Rapha=C3=ABl=20Vinot?= Date: Mon, 17 Feb 2020 19:15:39 +0100 Subject: [PATCH] chg: Use poetry, typing --- .gitignore | 3 + .travis.yml | 14 +- Pipfile | 18 -- Pipfile.lock | 324 ----------------------- poetry.lock | 589 ++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 53 ++++ pytaxonomies/api.py | 48 ++-- pytaxonomies/py.typed | 0 setup.py | 2 +- tests/tests.py | 1 + website/__init__.py | 14 +- 11 files changed, 688 insertions(+), 378 deletions(-) delete mode 100644 Pipfile delete mode 100644 Pipfile.lock create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 pytaxonomies/py.typed diff --git a/.gitignore b/.gitignore index d8b8728..8b8b06d 100644 --- a/.gitignore +++ b/.gitignore @@ -5,3 +5,6 @@ pytaxonomies.egg-info *.pyc .ipynb_checkpoints + +.coverage +.mypy_cache diff --git a/.travis.yml b/.travis.yml index 633dc45..f627ee3 100644 --- a/.travis.yml +++ b/.travis.yml @@ -7,15 +7,17 @@ python: - "3.6-dev" - "3.7" - "3.7-dev" - - "nightly" + - "3.8" + - "3.8-dev" install: - - pip install pipenv - - pipenv install -d + - pip install poetry + - poetry install -E webui -E remote script: - - pipenv run nosetests-3.4 --with-coverage --cover-package=pytaxonomies -d + - poetry run nosetests-3.4 --with-coverage --cover-package=pytaxonomies -d + - poetry run mypy --no-strict-optional pytaxonomies after_success: - - pipenv run codecov - - pipenv run coveralls + - poetry run codecov + - poetry run coveralls diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 43dadc3..0000000 --- a/Pipfile +++ /dev/null @@ -1,18 +0,0 @@ -[[source]] -name = "pypi" -url = "https://pypi.org/simple" -verify_ssl = true - -[dev-packages] -coveralls = "*" -codecov = "*" -jsonschema = "*" -nose = "*" - -[packages] -pytaxonomies = {editable = true,path = "."} -flask-nav = "*" -Flask = "*" -Flask-Bootstrap = "*" -Flask-WTF = "*" -Jinja2 = ">=2.10.1" # CVE-2019-10906 diff --git a/Pipfile.lock b/Pipfile.lock deleted file mode 100644 index 9c0a0e3..0000000 --- a/Pipfile.lock +++ /dev/null @@ -1,324 +0,0 @@ -{ - "_meta": { - "hash": { - "sha256": "e542ca441ea990ce2794d3add34cfa211cbb35eab240de216fdd295b8d5f3542" - }, - "pipfile-spec": 6, - "requires": {}, - "sources": [ - { - "name": "pypi", - "url": "https://pypi.org/simple", - "verify_ssl": true - } - ] - }, - "default": { - "certifi": { - "hashes": [ - "sha256:017c25db2a153ce562900032d5bc68e9f191e44e9a0f762f373977de9df1fbb3", - "sha256:25b64c7da4cd7479594d035c08c2d809eb4aab3a26e5a990ea98cc450c320f1f" - ], - "version": "==2019.11.28" - }, - "chardet": { - "hashes": [ - "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae", - "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691" - ], - "version": "==3.0.4" - }, - "click": { - "hashes": [ - "sha256:2335065e6395b9e67ca716de5f7526736bfa6ceead690adf616d925bdc622b13", - 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b/pyproject.toml @@ -0,0 +1,53 @@ +[tool.poetry] +name = "pytaxonomies" +version = "0.6" +description = "Python API for the taxonomies." +authors = ["Raphaël Vinot "] +license = "BSD-3-Clause" +repository = "https://github.com/MISP/PyTaxonomies" + +readme = "README.md" + +classifiers=[ + 'License :: OSI Approved :: BSD License', + 'Development Status :: 5 - Production/Stable', + 'Environment :: Console', + 'Intended Audience :: Science/Research', + 'Intended Audience :: Telecommunications Industry', + 'Programming Language :: Python', + 'Topic :: Security', + 'Topic :: Internet', +] + +include = ["pytaxonomies/data/misp-taxonomies/schema.json", + "pytaxonomies/data/misp-taxonomies/MANIFEST.json", + "pytaxonomies/data/misp-taxonomies/*/machinetag.json"] + +[tool.poetry.scripts] +pytaxonomies = 'bin/pytaxonomies' + + +[tool.poetry.dependencies] +python = "^3.6" +requests = { version = "^2.22.0", optional = true } +flask-nav = {version = "^0.6", optional = true} +Flask = {version = "^1.1.1", optional = true} +Flask-Bootstrap = {version = "^3.3.7", optional = true} +Flask-WTF = {version = "^0.14.3", optional = true} + +[tool.poetry.extras] +webui = ["flask-nav", "Flask", "Flask-Bootstrap", "Flask-WTF"] +remote = ["requests"] + +[tool.poetry.dev-dependencies] +coveralls = "^1.11.1" +codecov = "^2.0.15" +jsonschema = "^3.2.0" +nose = "^1.3.7" +mypy = "^0.761" + +[build-system] +requires = ["poetry>=0.12"] +build-backend = "poetry.masonry.api" + + diff --git a/pytaxonomies/api.py b/pytaxonomies/api.py index 37a110c..cee1f4a 100644 --- a/pytaxonomies/api.py +++ b/pytaxonomies/api.py @@ -7,6 +7,8 @@ import collections import re import sys from json import JSONEncoder +from pathlib import Path +from typing import Union, Dict, Optional, List, Callable, Any try: import requests @@ -15,7 +17,7 @@ except ImportError: HAS_REQUESTS = False try: - import jsonschema + import jsonschema # type: ignore HAS_JSONSCHEMA = True except ImportError: HAS_JSONSCHEMA = False @@ -30,7 +32,7 @@ class EncodeTaxonomies(JSONEncoder): class Entry(): - def __init__(self, entry=None): + def __init__(self, entry: Optional[Dict[str, str]]=None): if not entry: # We're creating a new one self.expanded = None @@ -44,7 +46,7 @@ class Entry(): self.description = entry.get('description') self.numerical_value = entry.get('numerical_value') - def to_dict(self): + def to_dict(self) -> Dict[str, str]: to_return = {'value': self.value} if self.expanded: to_return['expanded'] = self.expanded @@ -56,7 +58,7 @@ class Entry(): to_return['numerical_value'] = self.numerical_value return to_return - def to_json(self): + def to_json(self) -> str: return json.dumps(self, cls=EncodeTaxonomies) def __str__(self): @@ -65,7 +67,8 @@ class Entry(): class Predicate(collections.Mapping): - def __init__(self, predicate=None, entries=None): + def __init__(self, predicate: Optional[Dict[str, str]]=None, + entries: Optional[List[Dict[str, str]]]=None): if not predicate and not entries: # We're creating a new one self.expanded = None @@ -73,7 +76,7 @@ class Predicate(collections.Mapping): self.colour = None self.exclusive = None self.numerical_value = None - self.entries = {} + self.entries: Dict[str, Entry] = {} return self.predicate = predicate['value'] self.expanded = predicate.get('expanded') @@ -83,7 +86,7 @@ class Predicate(collections.Mapping): self.numerical_value = predicate.get('numerical_value') self.__init_entries(entries) - def __init_entries(self, entries): + def __init_entries(self, entries: Optional[List[Dict[str, str]]]=None): self.entries = {} if entries: for e in entries: @@ -105,7 +108,7 @@ class Predicate(collections.Mapping): to_return['entries'] = self.values() return to_return - def to_json(self): + def to_json(self) -> str: return json.dumps(self, cls=EncodeTaxonomies) def __str__(self): @@ -130,7 +133,7 @@ class Taxonomy(collections.Mapping): self.refs = None self.type = None self.exclusive = None - self.predicates = {} + self.predicates: Dict[str, Predicate] = {} return self.taxonomy = taxonomy self.name = self.taxonomy['namespace'] @@ -232,11 +235,10 @@ class Taxonomy(collections.Mapping): class Taxonomies(collections.Mapping): - def __init__(self, manifest_url='https://raw.githubusercontent.com/MISP/misp-taxonomies/master/MANIFEST.json', - manifest_path=os.path.join(os.path.abspath(os.path.dirname(sys.modules['pytaxonomies'].__file__)), - 'data', 'misp-taxonomies', 'MANIFEST.json')): + def __init__(self, manifest_url: str='https://raw.githubusercontent.com/MISP/misp-taxonomies/master/MANIFEST.json', + manifest_path: Union[Path, str]=Path(os.path.abspath(os.path.dirname(sys.modules['pytaxonomies'].__file__))) / 'data' / 'misp-taxonomies' / 'MANIFEST.json'): if manifest_path: - self.loader = self.__load_path + self.loader: Callable[..., Dict[Any, Any]] = self.__load_path self.manifest = self.loader(manifest_path) else: self.loader = self.__load_url @@ -260,17 +262,19 @@ class Taxonomies(collections.Mapping): for t in self.values(): jsonschema.validate(t.taxonomy, loaded_schema) - def __load_path(self, path): - with open(path, 'r') as f: + def __load_path(self, path: Union[Path, str]) -> Dict: + if isinstance(path, str): + path = Path(path) + with path.open('r') as f: return json.load(f) - def __load_url(self, url): + def __load_url(self, url: str) -> Dict: if not HAS_REQUESTS: raise Exception("Python module 'requests' isn't installed, unable to fetch the taxonomies.") return requests.get(url).json() - def __make_uri(self, taxonomy_name): - return '{}/{}/{}'.format(self.url, taxonomy_name, self.manifest['path']) + def __make_uri(self, taxonomy_name) -> str: + return f'{self.url}/{taxonomy_name}/{self.manifest["path"]}' def __init_taxonomies(self): self.taxonomies = {} @@ -281,7 +285,7 @@ class Taxonomies(collections.Mapping): if t['name'] != self.taxonomies[t['name']].name: raise Exception("The name of the taxonomy in the manifest ({}) doesn't match with the name in the taxonomy ({})".format(t['name'], self.taxonomies[t['name']].name)) - def __getitem__(self, name): + def __getitem__(self, name: str): return self.taxonomies[name] def __iter__(self): @@ -296,7 +300,7 @@ class Taxonomies(collections.Mapping): to_print += "{}\n\n".format(str(taxonomy)) return to_print - def search(self, query, expanded=False): + def search(self, query: str, expanded: bool=False) -> List: query = query.lower() to_return = [] for taxonomy in self.values(): @@ -311,7 +315,7 @@ class Taxonomies(collections.Mapping): to_return.append(mt) return to_return - def revert_machinetag(self, machinetag): + def revert_machinetag(self, machinetag: str): if '=' in machinetag: name, predicat, entry = re.findall('^([^:]*):([^=]*)="([^"]*)"$', machinetag)[0] else: @@ -322,7 +326,7 @@ class Taxonomies(collections.Mapping): else: return self.taxonomies[name], self.taxonomies[name][predicat] - def all_machinetags(self, expanded=False): + def all_machinetags(self, expanded: bool=False): if expanded: return [taxonomy.machinetags_expanded() for taxonomy in self.values()] return [taxonomy.machinetags() for taxonomy in self.values()] diff --git a/pytaxonomies/py.typed b/pytaxonomies/py.typed new file mode 100644 index 0000000..e69de29 diff --git a/setup.py b/setup.py index dcba233..4113d31 100644 --- a/setup.py +++ b/setup.py @@ -1,6 +1,6 @@ #!/usr/bin/env python # -*- coding: utf-8 -*- -from setuptools import setup +from setuptools import setup # type: ignore setup( diff --git a/tests/tests.py b/tests/tests.py index ebfd92c..38c609c 100644 --- a/tests/tests.py +++ b/tests/tests.py @@ -10,6 +10,7 @@ import pytaxonomies.api class TestPyTaxonomies(unittest.TestCase): def setUp(self): + self.maxDiff = None self.taxonomies_offline = Taxonomies() self.loaded_tax = {} for t in self.taxonomies_offline.manifest['taxonomies']: diff --git a/website/__init__.py b/website/__init__.py index 1b3d981..24f473c 100644 --- a/website/__init__.py +++ b/website/__init__.py @@ -2,12 +2,12 @@ # -*- coding: utf-8 -*- from flask import Flask, request, render_template -from flask_bootstrap import Bootstrap -from flask_nav import Nav -from flask_nav.elements import Navbar, View -from flask_wtf import FlaskForm -from wtforms import StringField, SubmitField -from wtforms.validators import DataRequired +from flask_bootstrap import Bootstrap # type: ignore +from flask_nav import Nav # type: ignore +from flask_nav.elements import Navbar, View # type: ignore +from flask_wtf import FlaskForm # type: ignore +from wtforms import StringField, SubmitField # type: ignore +from wtforms.validators import DataRequired # type: ignore from pytaxonomies import Taxonomies @@ -30,7 +30,7 @@ app.config['BOOTSTRAP_SERVE_LOCAL'] = True app.debug = True nav.init_app(app) -#t = Taxonomies(manifest_path="../../misp-taxonomies/MANIFEST.json") +# t = Taxonomies(manifest_path="../../misp-taxonomies/MANIFEST.json") t = Taxonomies()