Fix [tool] internal linking

pull/926/head
niclas 2024-02-06 16:07:46 +01:00
parent be112b6588
commit 8be35cfdb3
2 changed files with 89 additions and 29 deletions

View File

@ -164,7 +164,7 @@ class Cluster():
for synonym in sorted(self.meta['synonyms']):
synonyms_count += 1
self.entry += f' | `{synonym}` |\n'
synonyms_count_dict[self.value] = synonyms_count
synonyms_count_dict[self.uuid] = synonyms_count
def _create_uuid_entry(self):
if self.uuid:
@ -289,9 +289,26 @@ class Cluster():
output += f'| Cluster A | Cluster B | Level {{ .graph }} |\n'
output += f'|-----------|-----------|-------|\n'
for relation in relations:
cluster_a_section = relation[0].value.lower().replace(" ", "-").replace("/", "").replace(":", "")
cluster_b_section = relation[1].value.lower().replace(" ", "-").replace("/", "").replace(":", "")
if cluster_b_section != "private+cluster":
# cluster_a_section = relation[0].value.lower().replace(" ", "-").replace("/", "").replace(":", "")
# cluster_b_section = relation[1].value.lower().replace(" ", "-").replace("/", "").replace(":", "")
# Use a unique placeholder for " - "
placeholder = "__TMP__"
cluster_a_section = (relation[0].value.lower()
.replace(" - ", placeholder) # Replace " - " first
.replace(" ", "-")
.replace("/", "")
.replace(":", "")
.replace(placeholder, "-")) # Replace the placeholder with "-"
cluster_b_section = (relation[1].value.lower()
.replace(" - ", placeholder) # Replace " - " first
.replace(" ", "-")
.replace("/", "")
.replace(":", "")
.replace(placeholder, "-")) # Replace the placeholder with "-"
if cluster_b_section != "private-cluster":
output += f'| [{relation[0].value} ({relation[0].uuid})](../../{relation[0].galaxie_file_name}/index.md#{cluster_a_section}) | [{relation[1].value} ({relation[1].uuid})](../../{relation[1].galaxie_file_name}/index.md#{cluster_b_section}) | {relation[2]} |\n'
else:
output += f'| [{relation[0].value} ({relation[0].uuid})](../../{relation[0].galaxie_file_name}/index.md#{cluster_a_section}) | {relation[1].value} ({relation[1].uuid}) | {relation[2]} |\n'
@ -312,7 +329,7 @@ class Cluster():
def _write_relations(self, cluster_dict, path):
related_clusters = self.get_related_clusters(cluster_dict)
global relation_count_dict
relation_count_dict[self.value] = len(related_clusters)
relation_count_dict[self.uuid] = len(related_clusters)
galaxy_path = os.path.join(path, self.galaxie_file_name)
if not os.path.exists(galaxy_path):
os.mkdir(galaxy_path)
@ -369,12 +386,22 @@ def create_pie_chart(title, cakepieces):
def get_top_x(dict, x, big_to_small=True):
sorted_dict = sorted(dict.items(), key=operator.itemgetter(1), reverse=big_to_small)[:x]
top_x = [re.sub(r"[^A-Za-z0-9 ]", "", key) for key, value in sorted_dict]
# top_x = [re.sub(r"[^A-Za-z0-9 ]", "", key) for key, value in sorted_dict]
top_x = [key for key, value in sorted_dict]
top_x = ", ".join(top_x)
top_x_values = sorted(dict.values(), reverse=big_to_small)[:x]
return top_x, top_x_values
def create_statistics():
def cluster_name_to_section(name):
placeholder = "__TMP__"
return (name.lower()
.replace(" - ", placeholder) # Replace " - " first
.replace(" ", "-")
.replace("/", "")
.replace(":", "")
.replace(placeholder, "-")) # Replace the placeholder with "-"
def create_statistics(cluster_dict):
statistic_output = ""
statistic_output += f'# MISP Galaxy statistics\n'
statistic_output +='The MISP galaxy statistics are automatically generated based on the MISP galaxy JSON files. Therefore the statistics only include detailed infomration about public clusters and relations.\n'
@ -394,10 +421,10 @@ def create_statistics():
for galaxy in public_clusters_dict.values():
galaxy_counts[galaxy] = galaxy_counts.get(galaxy, 0) + 1
top_galaxies, top_galaxies_values = get_top_x(galaxy_counts, 20)
statistic_output += f' | No. | Galaxy | Count {{ .bar-chart }}|\n'
statistic_output += f' | No. | Galaxy | Count {{ .log-bar-chart }}|\n'
statistic_output += f' |----|--------|-------|\n'
for i, galaxy in enumerate(top_galaxies.split(", "), 1):
statistic_output += f' | {i} | [{galaxy}](./{galaxy}/index.md) | {top_galaxies_values[i-1]} |\n'
statistic_output += f' | {i} | [{galaxy}](../{galaxy.lower()}) | {top_galaxies_values[i-1]} |\n'
statistic_output += f'\n'
statistic_output += f'## Galaxies with the least clusters\n'
@ -405,7 +432,7 @@ def create_statistics():
statistic_output += f' | No. | Galaxy | Count {{ .bar-chart }}|\n'
statistic_output += f' |----|--------|-------|\n'
for i, galaxy in enumerate(flop_galaxies.split(", "), 1):
statistic_output += f' | {i} | [{galaxy}](./{galaxy}/index.md) | {flop_galaxies_values[i-1]} |\n'
statistic_output += f' | {i} | [{galaxy}](../{galaxy.lower()}) | {flop_galaxies_values[i-1]} |\n'
statistic_output += f'\n'
statistic_output += f'# Relation statistics\n'
@ -419,26 +446,36 @@ def create_statistics():
statistic_output += f'**Average number of relations per cluster**: {int(sum(relation_count_dict.values()) / len(relation_count_dict))}\n'
statistic_output += f'## Cluster with the most relations\n'
top_25_relation, top_25_relation_values = get_top_x(relation_count_dict, 20)
relation_count_dict_names = {cluster_dict[uuid].value: count for uuid, count in relation_count_dict.items()}
top_25_relation, top_25_relation_values = get_top_x(relation_count_dict_names, 20)
statistic_output += f' | No. | Cluster | Count {{ .bar-chart }}|\n'
statistic_output += f' |----|--------|-------|\n'
relation_count_dict_galaxies = {cluster_dict[uuid].value: cluster_dict[uuid].galaxie_file_name for uuid in relation_count_dict.keys()}
print(relation_count_dict_names)
print(relation_count_dict_galaxies)
for i, cluster in enumerate(top_25_relation.split(", "), 1):
statistic_output += f' | {i} | [{cluster}](./{cluster}/index.md) | {top_25_relation_values[i-1]} |\n'
# statistic_output += f' | {i} | [{cluster}](./{cluster}/index.md) | {top_25_relation_values[i-1]} |\n'
cluster_section = cluster_name_to_section(cluster)
statistic_output += f' | {i} | [{cluster}](../{relation_count_dict_galaxies[cluster]}/#{cluster_section}.md) | {top_25_relation_values[i-1]} |\n'
statistic_output += f'\n'
statistic_output += f'# Synonyms statistics\n'
statistic_output += f'## Cluster with the most synonyms\n'
top_synonyms, top_synonyms_values = get_top_x(synonyms_count_dict, 20)
synonyms_count_dict_names = {cluster_dict[uuid].value: count for uuid, count in synonyms_count_dict.items()}
top_synonyms, top_synonyms_values = get_top_x(synonyms_count_dict_names, 20)
statistic_output += f' | No. | Cluster | Count {{ .bar-chart }}|\n'
statistic_output += f' |----|--------|-------|\n'
synonyms_count_dict_galaxies = {cluster_dict[uuid].value: cluster_dict[uuid].galaxie_file_name for uuid in synonyms_count_dict.keys()}
for i, cluster in enumerate(top_synonyms.split(", "), 1):
statistic_output += f' | {i} | [{cluster}](./{cluster}/index.md) | {top_synonyms_values[i-1]} |\n'
# statistic_output += f' | {i} | [{cluster}](./{cluster}/index.md) | {top_synonyms_values[i-1]} |\n'
cluster_section = cluster_name_to_section(cluster)
statistic_output += f' | {i} | [{cluster}](../{synonyms_count_dict_galaxies[cluster]}/#{cluster_section}.md) | {top_synonyms_values[i-1]} |\n'
statistic_output += f'\n'
statistic_output += f'# Empty UUIDs statistics\n'
statistic_output += f'**Number of empty UUIDs**: {sum(empty_uuids_dict.values())}\n'
statistic_output += f'\n'
statistic_output += f'**Empty UUIDs per cluster**: {empty_uuids_dict}\n'
# statistic_output += f'# Empty UUIDs statistics\n'
# statistic_output += f'**Number of empty UUIDs**: {sum(empty_uuids_dict.values())}\n'
# statistic_output += f'\n'
# statistic_output += f'**Empty UUIDs per cluster**: {empty_uuids_dict}\n'
return statistic_output
@ -475,7 +512,7 @@ def main():
# break
index_output = create_index(galaxies)
statistic_output = create_statistics()
statistic_output = create_statistics(cluster_dict=cluster_dict)
with open(os.path.join(SITE_PATH, 'index.md'), "w") as index:
index.write(index_output)

View File

@ -62,10 +62,10 @@ document$.subscribe(function () {
.style("font-size", 17);
}
function createBarChart(data, elementId) {
function createBarChart(data, elementId, mode) {
// Set up the dimensions of the graph
var svgWidth = 1000, svgHeight = 1500;
var margin = { top: 20, right: 200, bottom: 450, left: 60 }, // Increase bottom margin for x-axis labels
var svgWidth = 1000, svgHeight = 1000;
var margin = { top: 20, right: 200, bottom: 350, left: 60 }, // Increase bottom margin for x-axis labels
width = svgWidth - margin.left - margin.right,
height = svgHeight - margin.top - margin.bottom;
@ -79,13 +79,18 @@ document$.subscribe(function () {
// Set up the scales
var x = d3.scaleBand()
.range([0, width])
.padding(0.1)
.padding(0.2)
.domain(data.map(d => d.name));
var maxYValue = d3.max(data, d => d.value);
var y = d3.scaleLinear()
.range([height, 0])
.domain([0, maxYValue + maxYValue * 0.1]); // Add padding to the max value
if (mode == "log") {
var minYValue = d3.min(data, d => d.value);
if (minYValue <= 0) {
console.error("Logarithmic scale requires strictly positive values");
return;
}
}
var y = mode == "log" ? d3.scaleLog().range([height, 0]).domain([1, maxYValue]) : d3.scaleLinear().range([height, 0]).domain([0, maxYValue + maxYValue * 0.1]);
// Set up the color scale
var color = d3.scaleOrdinal()
@ -104,11 +109,24 @@ document$.subscribe(function () {
.enter().append("rect")
.attr("class", "bar")
.attr("x", d => x(d.name))
.attr("y", d => y(d.value))
.attr("y", d => {
if (mode == "log") {
return y(Math.max(1, d.value));
} else if (mode == "linear") {
return y(d.value);
}
})
.attr("width", x.bandwidth())
.attr("height", d => height - y(d.value))
.attr("height", d => {
if (mode == "log") {
return height - y(Math.max(1, d.value));
} else if (mode == "linear") {
return height - y(d.value);
}
})
.attr("fill", d => color(d.name));
// Add and rotate x-axis labels
svg.append("g")
.attr("transform", "translate(0," + height + ")")
@ -128,6 +146,7 @@ document$.subscribe(function () {
document.querySelectorAll("table").forEach((table, index) => {
var pieChart = table.querySelector("th.pie-chart");
var barChart = table.querySelector("th.bar-chart");
var logBarChart = table.querySelector("th.log-bar-chart");
graphId = "graph" + index;
var div = document.createElement("div");
div.id = graphId;
@ -138,7 +157,11 @@ document$.subscribe(function () {
}
if (barChart) {
var data = parseTable(table);
createBarChart(data, "#" + graphId);
createBarChart(data, "#" + graphId, "linear");
}
if (logBarChart) {
var data = parseTable(table);
createBarChart(data, "#" + graphId, "log");
}
})