Merge remote-tracking branch 'origin/feature/upgrade-to-zf3' into ldap

.gitignore

@@ -1,13 +1,10 @@
 nbproject
 ._*
-.~lock.*
 .buildpath
 .DS_Store
 .idea
 .project
 .settings
-composer.lock
-vendor/bin
 migrations
 *.sublime-*
 vagrant/.vagrant/
@@ -19,12 +16,14 @@ public/js/
 public/img/
 public/flags/
 public/views/
+scripts/public
 module/
 npm-debug.log
 node_modules/
 bin/
-data/DoctrineORMModule/
+data/*
-data/monarc/
+!data/cache/.gitkeep
-data/json/
+!data/DoctrineORMModule/Proxy/.gitkeep
-go-pear.phar
+!data/LazyServices/Proxy/.gitkeep
+!data/json/.gitkeep
 scripts/public/

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "vendor/ZF2"]
-	path = vendor/ZF2
-	url = https://github.com/zendframework/zf2.git

CHANGELOG.md

@@ -1,6 +1,50 @@
 MONARC Changelog
 ================
 
+## 2.9.1 (2019-10-29)
+
+### Upgrade
+
+- upgrade of the Backend Framework. Now we use ZendFramework 3;
+- restructured the Monarc code to comply with PSR-2 standard;
+- updated the usage of the dependencies (Core and FrontOffice) from packagist.org;  
+- some code improvements and bug-fixes.
+
+## 2.9.0 (2019-08-23)
+
+### New
+
+- each analysis can now integrate a record of processing activities in order
+  to help you in your GDPR compliance efforts;
+- it is now possible to create and manage set of recommendations via the
+  knowledge base of a risk analysis. Like for the security referentials
+  (introduced in version 2.8.0), MOSP can now be used in order to
+  [share recommendations](https://objects.monarc.lu/schema/17).
+
+### Fix
+
+- Monarc 2.8.3 - invalid datetime format: 1292 [#179](https://github.com/monarc-project/MonarcAppFO/issues/179)
+- various minor fixes and improvements.
+
+
+## 2.8.3 (2019-07-26)
+
+### Enhancement
+
+- Some improvements in MOSP import
+- Some improvements in 3rd deliverable
+
+### Fix
+
+- SOA is not imported [#166](https://github.com/monarc-project/MonarcAppFO/issues/166)
+- Drag & drop in risk treatment plan fails after 1 change [#167](https://github.com/monarc-project/MonarcAppFO/issues/166)
+- Underscore "\_" is not considered as a special character in password reset [#169](https://github.com/monarc-project/MonarcAppFO/issues/169)
+- Error when duplicating object [#171](https://github.com/monarc-project/MonarcAppFO/issues/171)
+- Add objects in model/anr from common DB [#172](https://github.com/monarc-project/MonarcAppFO/issues/172)
+- Composed objects in the library->position [#174](https://github.com/monarc-project/MonarcAppFO/issues/174)
+- Import analysis -> conflict on uuid on objects [#175](https://github.com/monarc-project/MonarcAppFO/issues/175)
+- FO > Knowledge base > OP risks [#177](https://github.com/monarc-project/MonarcAppFO/issues/177)
+
 
 ## 2.8.2 (2019-05-28)
 

INSTALL/INSTALL.debian10.md

@@ -0,0 +1,184 @@
+Installation on Debian 10
+=========================
+
+# 1. Install LAMP & dependencies
+
+## 1.1. Install system dependencies
+
+    $ sudo apt-get install zip unzip git gettext curl gsfonts software-properties-common
+
+Some might already be installed.
+
+## 1.2. Install MariaDB
+
+    $ sudo apt-get install mariadb-server
+
+### Secure the MariaDB installation
+
+    $ sudo mysql_secure_installation
+
+Especially by setting a strong root password.
+
+## 1.3. Install Apache2
+
+    $ sudo apt-get install apache2
+
+### Enable modules, settings, and default of SSL in Apache
+
+    $ sudo a2dismod status
+    $ sudo a2enmod ssl
+    $ sudo a2enmod rewrite
+    $ sudo a2enmod headers
+
+### Apache Virtual Host
+
+    <VirtualHost _default_:80>
+        ServerAdmin admin@localhost.lu
+        ServerName monarc.local
+        DocumentRoot /var/lib/monarc/fo/public
+
+        <Directory /var/lib/monarc/fo/public>
+            DirectoryIndex index.php
+            AllowOverride All
+            Require all granted
+        </Directory>
+
+        <IfModule mod_headers.c>
+           Header always set X-Content-Type-Options nosniff
+           Header always set X-XSS-Protection "1; mode=block"
+           Header always set X-Robots-Tag none
+           Header always set X-Frame-Options SAMEORIGIN
+        </IfModule>
+
+        SetEnv APP_ENV "development"
+    </VirtualHost>
+
+
+## 1.4. Install PHP and dependencies
+
+    $ sudo apt-get install php7.3 libapache2-mod-php7.3 php7.3-curl php7.3-gd php7.3-mysql php7.3-apcu php7.3-xml php7.3-mbstring php7.3-intl php7.3-imagick php7.3-zip
+
+    $ curl -sS https://getcomposer.org/installer -o composer-setup.php
+    $ sudo php composer-setup.php --install-dir=/usr/bin --filename=composer
+
+## 1.5 Apply all changes
+
+    $ sudo systemctl restart apache2.service
+
+
+
+# 2. Installation of MONARC
+
+## 2.1. MONARC source code
+
+    $ mkdir -p /var/lib/monarc/fo
+    $ git clone https://github.com/monarc-project/MonarcAppFO.git /var/lib/monarc/fo
+    $ cd /var/lib/monarc/fo
+    $ mkdir -p data/cache
+    $ mkdir -p data/LazyServices/Proxy
+    $ chmod -R g+w data
+    $ composer install -o
+
+
+### Back-end
+
+The back-end is using the Zend Framework 3.
+
+Create two symbolic links:
+
+    $ cd module/Monarc
+    $ ln -s ./../../vendor/monarc/core Core
+    $ ln -s ./../../vendor/monarc/frontoffice FrontOffice
+    $ cd ../..
+
+There are 2 parts:
+
+* Monarc\FrontOffice is only for MONARC;
+* Monarc\Core is common to MONARC and to the back office of MONARC.
+
+
+### Front-end
+
+The frontend is an AngularJS application.
+
+    $ mkdir node_modules
+    $ cd node_modules
+    $ git clone https://github.com/monarc-project/ng-client.git ng_client
+    $ git clone https://github.com/monarc-project/ng-anr.git ng_anr
+
+There are 2 parts:
+
+* one only for MONARC: ng_client;
+* one common for MONARC and the back office of MONARC: ng_anr.
+
+
+## 2.2. Databases
+
+### Create 2 databases
+
+In your MariaDB interpreter:
+
+    MariaDB [(none)]> CREATE DATABASE monarc_cli DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
+    MariaDB [(none)]> CREATE DATABASE monarc_common DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
+
+* monarc_common contains models and data created by CASES;
+* monarc_cli contains all client risk analyses. Each analysis is based on CASES
+  model of monarc_common.
+
+### Initializes the database
+
+    $ mysql -u user monarc_common < db-bootstrap/monarc_structure.sql
+    $ mysql -u user monarc_common < db-bootstrap/monarc_data.sql
+
+### Database connection
+
+Create the configuration file:
+
+    $ sudo cp ./config/autoload/local.php.dist ./config/autoload/local.php
+
+And configure the database connection:
+
+    return array(
+        'doctrine' => array(
+            'connection' => array(
+                'orm_default' => array(
+                    'params' => array(
+                        'host' => 'localhost',
+                        'user' => 'sqlmonarcuser',
+                        'password' => '<password>',
+                        'dbname' => 'monarc_common',
+                    ),
+                ),
+                'orm_cli' => array(
+                    'params' => array(
+                        'host' => 'localhost',
+                        'user' => 'sqlmonarcuser',
+                        'password' => '<password>',
+                        'dbname' => 'monarc_cli',
+                    ),
+                ),
+            ),
+        ),
+    );
+
+
+
+# 3. Update MONARC
+
+Install Grunt:
+
+    $ curl -sL https://deb.nodesource.com/setup_13.x | sudo bash -
+    $ sudo apt-get install nodejs
+    $ npm install -g grunt-cli
+
+then update MONARC:
+
+    $ ./scripts/update-all.sh -c
+
+
+# 4. Create initial user
+
+    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/Monarc/FrontOffice/migrations/phinx.php
+
+
+The username is *admin@admin.test* and the password is *admin*.

INSTALL/INSTALL.rhel7.md

@@ -69,10 +69,10 @@ Clone the repository and invoke composer
 
 Backend
 
-    $ mkdir module
+    $ cd module/Monarc
-    $ cd module/
+    $ ln -s ./../../vendor/monarc/core Core
-    $ ln -s ./../vendor/monarc/core MonarcCore
+    $ ln -s ./../../vendor/monarc/frontoffice FrontOffice
-    $ ln -s ./../vendor/monarc/frontoffice MonarcFO
+    $ cd ../..
 
 Frontend
 
@@ -97,7 +97,7 @@ Update MONARC (including npm config for explicit proxy)
 
 Create initial user
 
-    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcFO/migrations/phinx.php
+    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/Monarc/FrontOffice/migrations/phinx.php
 
 # Configure apache (as root)
 
@@ -128,4 +128,4 @@ Set file ownership for monarc installation
        Header always set X-Frame-Options SAMEORIGIN
     </IfModule>
 
-    SetEnv APPLICATION_ENV "development"
+    SetEnv APP_ENV "development"

INSTALL/INSTALL.ubuntu1604.md

@@ -49,7 +49,7 @@ Especially by setting a strong root password.
            Header always set X-Frame-Options SAMEORIGIN
         </IfModule>
 
-        SetEnv APPLICATION_ENV "development"
+        SetEnv APP_ENV "development"
     </VirtualHost>
 
 
@@ -88,15 +88,15 @@ You must create modules with symbolic links to libraries.
 
 Create two symbolic links:
 
-    $ mkdir module
+    $ cd module/Monarc
-    $ cd module/
+    $ ln -s ./../../vendor/monarc/core Core
-    $ ln -s ./../vendor/monarc/core MonarcCore
+    $ ln -s ./../../vendor/monarc/frontoffice FrontOffice
-    $ ln -s ./../vendor/monarc/frontoffice MonarcFO
+    $ cd ../..
 
 There are 2 parts:
 
-* MonarcFO is only for front office;
+* Monarc\FrontOffice is only for front office;
-* MonarcCore is common to the front office and to the back office.
+* Monarc\Core is common to the front office and to the back office.
 
 
 ### Frontend
@@ -188,7 +188,7 @@ execute the database migration scripts and compile the translations.
 
 # Create initial user
 
-    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcFO/migrations/phinx.php
+    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/Monarc/FrontOffice/migrations/phinx.php
 
 
 The username is *admin@admin.test* and the password is *admin*.

INSTALL/INSTALL.ubuntu1804.md

@@ -3,37 +3,38 @@ Installation on Ubuntu 18.04
 
 # 1. Install LAMP & dependencies
 
-## Install the dependencies
+## 1.1. Install system dependencies
 
-    $ sudo apt-get install vim zip unzip git gettext curl gsfonts
+    $ sudo apt-get install zip unzip git gettext curl gsfonts
 
 Some might already be installed.
 
-## Install MariaDB
+## 1.2. Install MariaDB
 
     $ sudo apt-get install mariadb-client mariadb-server
 
-# Secure the MariaDB installation
+### Secure the MariaDB installation
 
     $ sudo mysql_secure_installation
 
 Especially by setting a strong root password.
 
-## Install Apache2
+## 1.3. Install Apache2
 
     $ sudo apt-get install apache2
 
-## Enable modules, settings, and default of SSL in Apache
+### Enable modules, settings, and default of SSL in Apache
 
     $ sudo a2dismod status
     $ sudo a2enmod ssl
     $ sudo a2enmod rewrite
     $ sudo a2enmod headers
 
-## Apache Virtual Host
+### Apache Virtual Host
 
-    <VirtualHost *:80>
+    <VirtualHost _default_:80>
-        ServerName monarc.localhost
+        ServerAdmin admin@localhost.lu
+        ServerName monarc.local
         DocumentRoot /var/lib/monarc/fo/public
 
         <Directory /var/lib/monarc/fo/public>
@@ -49,15 +50,15 @@ Especially by setting a strong root password.
            Header always set X-Frame-Options SAMEORIGIN
         </IfModule>
 
-        SetEnv APPLICATION_ENV "development"
+        SetEnv APP_ENV "development"
     </VirtualHost>
 
 
-## Install PHP and dependencies
+## 1.4. Install PHP and dependencies
 
-    $ sudo apt-get install php apache2 libapache2-mod-php php-curl php-gd php-mysql php-pear php-apcu php-xml php-mbstring php-intl php-imagick php-zip
+    $ sudo apt-get install php apache2 libapache2-mod-php php-curl php-gd php-mysql php-pear php-apcu php-xml php-mbstring php-intl php-imagick php-zip composer
 
-## Apply all changes
+## 1.5 Apply all changes
 
     $ sudo systemctl restart apache2.service
 
@@ -65,41 +66,35 @@ Especially by setting a strong root password.
 
 # 2. Installation of MONARC
 
-## MONARC code
+## 2.1. MONARC source code
 
-Clone the repository and invoke `composer` using the shipped `composer.phar`:
+    $ mkdir -p /var/lib/monarc/fo
-
+    $ git clone https://github.com/monarc-project/MonarcAppFO.git /var/lib/monarc/fo
-    $ cd /var/lib/monarc/
+    $ cd /var/lib/monarc/fo
-    $ git clone https://github.com/monarc-project/MonarcAppFO.git fo
+    $ mkdir -p data/cache
-    $ cd fo/
+    $ mkdir -p data/LazyServices/Proxy
-    $ chown -R www-data data
     $ chmod -R g+w data
-    $ sudo composer self-update
     $ composer install -o
 
-The `self-update` directive is to ensure you have an up-to-date `composer.phar`
-available.
 
+### Back-end
 
-### Backend
+The back-end is using the Zend Framework 3.
-
-The backend is not directly modules of the project but libraries.
-You must create modules with symbolic links to libraries.
 
 Create two symbolic links:
 
-    $ mkdir module
+    $ cd module/Monarc
-    $ cd module/
+    $ ln -s ./../../vendor/monarc/core Core
-    $ ln -s ./../vendor/monarc/core MonarcCore
+    $ ln -s ./../../vendor/monarc/frontoffice FrontOffice
-    $ ln -s ./../vendor/monarc/frontoffice MonarcFO
+    $ cd ../..
 
 There are 2 parts:
 
-* MonarcFO is only for front office;
+* Monarc\FrontOffice is only for MONARC;
-* MonarcCore is common to the front office and to the back office.
+* Monarc\Core is common to MONARC and to the back office of MONARC.
 
 
-### Frontend
+### Front-end
 
 The frontend is an AngularJS application.
 
@@ -110,18 +105,18 @@ The frontend is an AngularJS application.
 
 There are 2 parts:
 
-* one only for front office: ng_client;
+* one only for MONARC: ng_client;
-* one common for front office and back office: ng_anr.
+* one common for MONARC and the back office of MONARC: ng_anr.
 
 
-## Databases
+## 2.2. Databases
 
 ### Create 2 databases
 
 In your MariaDB interpreter:
 
-    CREATE DATABASE monarc_cli DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
+    MariaDB [(none)]> CREATE DATABASE monarc_cli DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
-    CREATE DATABASE monarc_common DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
+    MariaDB [(none)]> CREATE DATABASE monarc_common DEFAULT CHARACTER SET utf8 DEFAULT COLLATE utf8_general_ci;
 
 * monarc_common contains models and data created by CASES;
 * monarc_cli contains all client risk analyses. Each analysis is based on CASES
@@ -145,17 +140,17 @@ And configure the database connection:
             'connection' => array(
                 'orm_default' => array(
                     'params' => array(
-                        'host' => 'host',
+                        'host' => 'localhost',
-                        'user' => 'user',
+                        'user' => 'sqlmonarcuser',
-                        'password' => 'password',
+                        'password' => '<password>',
                         'dbname' => 'monarc_common',
                     ),
                 ),
                 'orm_cli' => array(
                     'params' => array(
-                        'host' => 'host',
+                        'host' => 'localhost',
-                        'user' => 'user',
+                        'user' => 'sqlmonarcuser',
-                        'password' => 'password',
+                        'password' => '<password>',
                         'dbname' => 'monarc_cli',
                     ),
                 ),
@@ -165,22 +160,21 @@ And configure the database connection:
 
 
 
-# Update MONARC
+# 3. Update MONARC
 
-## Install Grunt
+Install Grunt:
 
     $ sudo apt-get -y install npm
     $ npm install -g grunt-cli
 
+then update MONARC:
 
-Update MONARC:
+    $ ./scripts/update-all.sh -c
-
-    $ ./scripts/update-all.sh
 
 
-# Create initial user
+# 4. Create initial user
 
-    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcFO/migrations/phinx.php
+    $ php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/Monarc/FrontOffice/migrations/phinx.php
 
 
 The username is *admin@admin.test* and the password is *admin*.

VERSION.json

@@ -1 +1 @@
-{"major":2, "minor":8, "hotfix":2}
+{"major":2, "minor":9, "hotfix":1}

composer.json

@@ -1,6 +1,6 @@
 {
-    "name": "monarc/skeleton",
+    "name": "monarc/monarc",
-    "description": "Skeleton for Monarc project",
+    "description": "Monarc application",
     "authors": [
         {"name": "Cyril Rouyer", "email": "cyril@netlor.fr"},
         {"name": "Guillaume Lesniak", "email": "guillaume@netlor.fr"},
@@ -12,32 +12,23 @@
         {"name": "Cédric Bonhomme", "email": "cedric.bonhomme@cases.lu"}
     ],
     "require": {
-        "php": ">=5.5",
+        "php": "^7.1",
-        "zendframework/zendframework": "2.5.3",
+        "ext-json": "*",
-        "doctrine/doctrine-orm-module": "^0.10",
+        "ext-pdo": "*",
-        "robmorgan/phinx": "0.5.*",
+        "monarc/core": "dev-feature/upgrade-to-zf3",
-        "monarc/core": "dev-master",
+        "monarc/frontoffice": "dev-feature/upgrade-to-zf3",
-        "monarc/frontoffice": "dev-master",
+        "monarc/phpword": "dev-master",
-        "phing/phing": "~2.0",
+        "zendframework/zend-mvc": "^3.1",
-        "phpoffice/phpword": "dev-stable",
+        "zendframework/zend-di": "^3.1",
-        "ramsey/uuid": "^3.8",
+        "zendframework/zend-permissions-rbac": "^3.0",
-        "ramsey/uuid-doctrine": "^1.5"
+        "zendframework/zend-log": "^2.11",
+        "zendframework/zend-i18n": "^2.9"
+    },
+    "require-dev": {
+        "roave/security-advisories": "dev-master",
+        "zendframework/zend-component-installer": "^2.1"
     },
     "config": {
         "bin-dir": "bin/"
-    },
+    }
-    "repositories": [
-        {
-            "type": "vcs",
-            "url": "https://github.com/monarc-project/zm-core"
-        },
-        {
-            "type": "vcs",
-            "url": "https://github.com/monarc-project/zm-client"
-        },
-        {
-            "type": "vcs",
-            "url": "https://github.com/monarc-project/monarc_phpword"
-        }
-    ]
 }

config/application.config.php

@@ -5,37 +5,52 @@
  *
  * @see https://github.com/zendframework/ZFTool
  */
-$env = getenv('APP_ENV') ?: 'production';
+$env = getenv('APPLICATION_ENV') ?: 'production';
-$appconfdir = getenv('APP_CONF_DIR') ? getenv('APP_CONF_DIR') : '';
+$appConfDir = getenv('APP_CONF_DIR') ?? '';
 
-$confpaths = [ 'config/autoload/{,*.}{global,local}.php' ];
+$confPaths = ['config/autoload/{,*.}{global,local}.php'];
-$datapath = "data";
+$dataPath = 'data';
-if( ! empty($appconfdir) ){
+if (!empty($appConfDir)) {
-    $confpaths[] = $appconfdir.'/local.php';
+    $confPaths[] = $appConfDir . '/local.php';
-    $datapath = $appconfdir.'/data';
+    $dataPath = $appConfDir . '/data';
-    if(!is_dir($datapath.'/cache')){
+    if (!is_dir($dataPath . '/cache')) {
-        mkdir($datapath.'/cache');
+        if (!mkdir($concurrentDirectory = $dataPath . '/cache') && !is_dir($concurrentDirectory)) {
+            throw new \RuntimeException(sprintf('Directory "%s" was not created', $concurrentDirectory));
+        }
     }
 }
 
-return array(
+return [
-    'modules' => array(
+    'modules' => [
+        'Zend\Mvc\Console',
+        'Zend\I18n',
+        'Zend\Mail',
+        'Zend\Log',
+        'Monarc\Core',
+        'Monarc\FrontOffice',
+        'Zend\Cache',
+        'Zend\Form',
+        'Zend\InputFilter',
+        'Zend\Filter',
+        'Zend\Paginator',
+        'Zend\Hydrator',
+        'Zend\Di',
+        'Zend\Router',
+        'Zend\Validator',
         'DoctrineModule',
         'DoctrineORMModule',
-        'MonarcCore',
+    ],
-        'MonarcFO',
+    'module_listener_options' => [
-    ),
+        'module_paths' => [
-    'module_listener_options' => array(
-        'module_paths' => array(
             './module',
             './vendor'
-        ),
+        ],
-        'config_glob_paths' => $confpaths,
+        'config_glob_paths' => $confPaths,
-        'config_cache_enabled' => ($env == 'production'),
+        'config_cache_enabled' => $env === 'production',
         'config_cache_key' => 'c8aaaaa11586f8b1bf5565cc6064e70a', // md5('config_cache_key_monarc')
-        'module_map_cache_enabled' => ($env == 'production'),
+        'module_map_cache_enabled' => $env === 'production',
         'module_map_cache_key' => '664579376c4dcdcaa0bcdd0f7e7bf25b', // md5('module_map_cache_key_monarc'),
-        'cache_dir' => $datapath.'/cache/',
+        'cache_dir' => $dataPath . '/cache/',
-        'check_dependencies' => ($env != 'production'),
+        'check_dependencies' => $env !== 'production',
-    ),
+    ],
-);
+];

config/autoload/global.php

@@ -11,7 +11,11 @@
  * file.
  */
 
-$appconfdir = getenv('APP_CONF_DIR') ? getenv('APP_CONF_DIR') : '';
+use Doctrine\DBAL\Driver\PDOMySql\Driver;
+use Monarc\Core\Service\DoctrineCacheServiceFactory;
+use Monarc\Core\Service\DoctrineLoggerFactory;
+
+$appconfdir = getenv('APP_CONF_DIR') ?? '';
 
 $datapath = "data";
 if( ! empty($appconfdir) ){
@@ -22,14 +26,14 @@ return array(
     // DOCTRINE CONF
     'service_manager' => array(
         'factories' => array(
-            'doctrine.cache.mycache' => 'MonarcCore\Service\DoctrineCacheServiceFactory',
+            'doctrine.cache.mycache' => DoctrineCacheServiceFactory::class,
-            'doctrine.monarc_logger' => 'MonarcCore\Service\DoctrineLoggerFactory',
+            'doctrine.monarc_logger' => DoctrineLoggerFactory::class,
         ),
     ),
     'doctrine' => array(
         'connection' => array(
             'orm_default' => array(
-                'driverClass' => 'Doctrine\DBAL\Driver\PDOMySql\Driver',
+                'driverClass' => Driver::class,
                 'params' => array(
                     'host' => 'localhost',
                     'port' => 3306,
@@ -45,7 +49,7 @@ return array(
                 ),
             ),
             'orm_cli' => array(
-                'driverClass' => 'Doctrine\DBAL\Driver\PDOMySql\Driver',
+                'driverClass' => Driver::class,
                 'params' => array(
                     'host' => 'localhost',
                     'port' => 3306,

db-bootstrap/monarc_structure.sql

@@ -1,8 +1,8 @@
--- MySQL dump 10.15  Distrib 10.0.38-MariaDB, for debian-linux-gnu (x86_64)
+-- MySQL dump 10.16  Distrib 10.1.41-MariaDB, for debian-linux-gnu (x86_64)
 --
 -- Host: localhost    Database: monarc_common
 -- ------------------------------------------------------
--- Server version	10.0.38-MariaDB-0ubuntu0.16.04.1
+-- Server version	10.1.41-MariaDB-0ubuntu0.18.04.1
 
 /*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
 /*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
@@ -23,27 +23,28 @@ DROP TABLE IF EXISTS `amvs`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `amvs` (
-  `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `uuid` char(36) NOT NULL,
+  `vulnerability_id` char(36) NOT NULL,
+  `threat_id` char(36) NOT NULL,
+  `asset_id` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
-  `asset_id` int(11) unsigned DEFAULT NULL,
-  `threat_id` int(11) unsigned DEFAULT NULL,
-  `vulnerability_id` int(11) unsigned DEFAULT NULL,
   `position` int(11) DEFAULT '1',
   `status` int(11) DEFAULT '1',
   `creator` varchar(255) DEFAULT NULL,
   `created_at` datetime DEFAULT NULL,
   `updater` varchar(255) DEFAULT NULL,
   `updated_at` datetime DEFAULT NULL,
-  PRIMARY KEY (`id`),
+  PRIMARY KEY (`uuid`),
   KEY `anr_id` (`anr_id`),
   KEY `asset_id` (`asset_id`),
   KEY `threat_id` (`threat_id`),
   KEY `vulnerability_id` (`vulnerability_id`),
+  KEY `uuid` (`uuid`),
   CONSTRAINT `amvs_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `amvs_ibfk_2` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `amvs_ibfk_5` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`uuid`) ON DELETE CASCADE,
-  CONSTRAINT `amvs_ibfk_3` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `amvs_ibfk_6` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`uuid`) ON DELETE CASCADE,
-  CONSTRAINT `amvs_ibfk_4` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`id`) ON DELETE CASCADE
+  CONSTRAINT `amvs_ibfk_7` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`uuid`) ON DELETE CASCADE
-) ENGINE=InnoDB AUTO_INCREMENT=11985 DEFAULT CHARSET=utf8;
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -103,13 +104,13 @@ DROP TABLE IF EXISTS `anrs_objects`;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `anrs_objects` (
   `id` int(11) NOT NULL AUTO_INCREMENT,
+  `object_id` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
-  `object_id` int(11) unsigned DEFAULT NULL,
   PRIMARY KEY (`id`),
   KEY `anr_id` (`anr_id`),
   KEY `object_id` (`object_id`),
   CONSTRAINT `anrs_objects_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `anrs_objects_ibfk_2` FOREIGN KEY (`object_id`) REFERENCES `objects` (`id`) ON DELETE CASCADE
+  CONSTRAINT `anrs_objects_ibfk_2` FOREIGN KEY (`object_id`) REFERENCES `objects` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB AUTO_INCREMENT=1535 DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -145,7 +146,7 @@ DROP TABLE IF EXISTS `assets`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `assets` (
-  `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `uuid` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT '0',
   `mode` tinyint(4) DEFAULT '1',
   `type` tinyint(4) DEFAULT '1',
@@ -163,11 +164,12 @@ CREATE TABLE `assets` (
   `created_at` datetime DEFAULT NULL,
   `updater` varchar(255) DEFAULT NULL,
   `updated_at` datetime DEFAULT NULL,
-  PRIMARY KEY (`id`),
+  PRIMARY KEY (`uuid`),
   KEY `anr_id` (`anr_id`,`code`),
   KEY `anr_id_2` (`anr_id`),
+  KEY `uuid` (`uuid`),
   CONSTRAINT `assets_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE
-) ENGINE=InnoDB AUTO_INCREMENT=357 DEFAULT CHARSET=utf8;
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -178,15 +180,13 @@ DROP TABLE IF EXISTS `assets_models`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `assets_models` (
-  `asset_id` int(11) unsigned NOT NULL,
   `model_id` int(11) unsigned NOT NULL,
+  `asset_id` char(36) NOT NULL,
   PRIMARY KEY (`asset_id`,`model_id`),
-  KEY `asset_id` (`asset_id`),
   KEY `model_id` (`model_id`),
-  CONSTRAINT `assets_models_ibfk_1` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`id`),
   CONSTRAINT `assets_models_ibfk_2` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`),
-  CONSTRAINT `assets_models_ibfk_3` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `assets_models_ibfk_4` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `assets_models_ibfk_4` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`) ON DELETE CASCADE
+  CONSTRAINT `assets_models_ibfk_5` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -279,9 +279,9 @@ DROP TABLE IF EXISTS `instances`;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `instances` (
   `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `object_id` char(36) DEFAULT NULL,
+  `asset_id` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
-  `asset_id` int(11) unsigned DEFAULT NULL,
-  `object_id` int(11) unsigned DEFAULT NULL,
   `root_id` int(11) unsigned DEFAULT NULL,
   `parent_id` int(11) unsigned DEFAULT NULL,
   `name1` varchar(255) DEFAULT NULL,
@@ -309,15 +309,15 @@ CREATE TABLE `instances` (
   `dh` tinyint(4) DEFAULT '0',
   PRIMARY KEY (`id`),
   KEY `anr_id` (`anr_id`),
-  KEY `asset_id` (`asset_id`),
-  KEY `object_id` (`object_id`),
   KEY `root_id` (`root_id`),
   KEY `parent_id` (`parent_id`),
+  KEY `asset_id` (`asset_id`),
+  KEY `object_id` (`object_id`),
   CONSTRAINT `instances_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `instances_ibfk_2` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `instances_ibfk_3` FOREIGN KEY (`object_id`) REFERENCES `objects` (`id`) ON DELETE CASCADE,
   CONSTRAINT `instances_ibfk_4` FOREIGN KEY (`root_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `instances_ibfk_5` FOREIGN KEY (`parent_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE
+  CONSTRAINT `instances_ibfk_5` FOREIGN KEY (`parent_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `instances_ibfk_6` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`uuid`) ON DELETE CASCADE,
+  CONSTRAINT `instances_ibfk_7` FOREIGN KEY (`object_id`) REFERENCES `objects` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -330,9 +330,9 @@ DROP TABLE IF EXISTS `instances_consequences`;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `instances_consequences` (
   `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `object_id` char(36) DEFAULT NULL,
   `anr_id` int(11) unsigned DEFAULT '0',
   `instance_id` int(11) unsigned DEFAULT '0',
-  `object_id` int(11) unsigned DEFAULT '0',
   `scale_impact_type_id` int(11) unsigned DEFAULT '0',
   `is_hidden` tinyint(4) DEFAULT '0',
   `locally_touched` tinyint(4) DEFAULT '0',
@@ -346,11 +346,9 @@ CREATE TABLE `instances_consequences` (
   PRIMARY KEY (`id`),
   KEY `anr_id` (`anr_id`),
   KEY `instance_id` (`instance_id`),
-  KEY `object_id` (`object_id`),
   KEY `scale_impact_type_id` (`scale_impact_type_id`),
   CONSTRAINT `instances_consequences_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
   CONSTRAINT `instances_consequences_ibfk_2` FOREIGN KEY (`instance_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `instances_consequences_ibfk_3` FOREIGN KEY (`object_id`) REFERENCES `objects` (`id`) ON DELETE CASCADE,
   CONSTRAINT `instances_consequences_ibfk_4` FOREIGN KEY (`scale_impact_type_id`) REFERENCES `scales_impact_types` (`id`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
@@ -364,12 +362,12 @@ DROP TABLE IF EXISTS `instances_risks`;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `instances_risks` (
   `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `amv_id` char(36) DEFAULT NULL,
+  `vulnerability_id` char(36) NOT NULL,
+  `threat_id` char(36) NOT NULL,
+  `asset_id` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
-  `amv_id` int(11) unsigned DEFAULT NULL,
   `specific` tinyint(4) DEFAULT '0',
-  `asset_id` int(11) unsigned DEFAULT NULL,
-  `threat_id` int(11) unsigned DEFAULT NULL,
-  `vulnerability_id` int(11) unsigned DEFAULT NULL,
   `mh` tinyint(4) NOT NULL DEFAULT '1',
   `threat_rate` int(11) NOT NULL DEFAULT '-1',
   `vulnerability_rate` int(11) NOT NULL DEFAULT '-1',
@@ -389,17 +387,17 @@ CREATE TABLE `instances_risks` (
   `instance_id` int(11) unsigned DEFAULT '0',
   PRIMARY KEY (`id`),
   KEY `anr_id` (`anr_id`),
-  KEY `amv_id` (`amv_id`),
+  KEY `instance_id` (`instance_id`),
   KEY `asset_id` (`asset_id`),
   KEY `threat_id` (`threat_id`),
   KEY `vulnerability_id` (`vulnerability_id`),
-  KEY `instance_id` (`instance_id`),
+  KEY `amv_id` (`amv_id`),
   CONSTRAINT `instances_risks_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `instances_risks_ibfk_2` FOREIGN KEY (`amv_id`) REFERENCES `amvs` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `instances_risks_ibfk_10` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`uuid`) ON DELETE CASCADE,
-  CONSTRAINT `instances_risks_ibfk_4` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `instances_risks_ibfk_11` FOREIGN KEY (`amv_id`) REFERENCES `amvs` (`uuid`) ON DELETE CASCADE,
-  CONSTRAINT `instances_risks_ibfk_5` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `instances_risks_ibfk_7` FOREIGN KEY (`instance_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `instances_risks_ibfk_6` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `instances_risks_ibfk_8` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`uuid`) ON DELETE CASCADE,
-  CONSTRAINT `instances_risks_ibfk_7` FOREIGN KEY (`instance_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE
+  CONSTRAINT `instances_risks_ibfk_9` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -412,9 +410,9 @@ DROP TABLE IF EXISTS `instances_risks_op`;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `instances_risks_op` (
   `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `object_id` char(36) DEFAULT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
   `instance_id` int(11) unsigned DEFAULT NULL,
-  `object_id` int(11) unsigned DEFAULT NULL,
   `rolf_risk_id` int(11) unsigned DEFAULT NULL,
   `risk_cache_code` char(100) DEFAULT NULL,
   `risk_cache_label1` varchar(255) DEFAULT NULL,
@@ -457,12 +455,12 @@ CREATE TABLE `instances_risks_op` (
   PRIMARY KEY (`id`),
   KEY `anr_id` (`anr_id`),
   KEY `instance_id` (`instance_id`),
-  KEY `object_id` (`object_id`),
   KEY `rolf_risk_id` (`rolf_risk_id`),
+  KEY `object_id` (`object_id`),
   CONSTRAINT `instances_risks_op_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
   CONSTRAINT `instances_risks_op_ibfk_2` FOREIGN KEY (`instance_id`) REFERENCES `instances` (`id`) ON DELETE CASCADE,
   CONSTRAINT `instances_risks_op_ibfk_3` FOREIGN KEY (`rolf_risk_id`) REFERENCES `rolf_risks` (`id`) ON DELETE SET NULL,
-  CONSTRAINT `instances_risks_op_ibfk_4` FOREIGN KEY (`object_id`) REFERENCES `objects` (`id`) ON DELETE CASCADE
+  CONSTRAINT `instances_risks_op_ibfk_4` FOREIGN KEY (`object_id`) REFERENCES `objects` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -506,17 +504,17 @@ DROP TABLE IF EXISTS `measures_amvs`;
 CREATE TABLE `measures_amvs` (
   `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
   `measure_id` char(36) NOT NULL,
-  `amv_id` int(11) unsigned DEFAULT NULL,
   `creator` varchar(255) DEFAULT NULL,
   `created_at` datetime DEFAULT NULL,
   `updater` varchar(255) DEFAULT NULL,
   `updated_at` datetime DEFAULT NULL,
+  `amv_id` char(36) NOT NULL,
   PRIMARY KEY (`id`),
-  KEY `amv_id` (`amv_id`),
   KEY `measure_id` (`measure_id`),
-  CONSTRAINT `measures_amvs_ibfk_1` FOREIGN KEY (`amv_id`) REFERENCES `amvs` (`id`) ON DELETE CASCADE,
+  KEY `amv_id` (`amv_id`),
-  CONSTRAINT `measures_amvs_ibfk_2` FOREIGN KEY (`measure_id`) REFERENCES `measures` (`uuid`) ON DELETE CASCADE
+  CONSTRAINT `measures_amvs_ibfk_2` FOREIGN KEY (`measure_id`) REFERENCES `measures` (`uuid`) ON DELETE CASCADE,
-) ENGINE=InnoDB AUTO_INCREMENT=37164 DEFAULT CHARSET=utf8;
+  CONSTRAINT `measures_amvs_ibfk_3` FOREIGN KEY (`amv_id`) REFERENCES `amvs` (`uuid`) ON DELETE CASCADE
+) ENGINE=InnoDB AUTO_INCREMENT=39861 DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -598,7 +596,7 @@ CREATE TABLE `models` (
   PRIMARY KEY (`id`),
   KEY `anr_id` (`anr_id`),
   CONSTRAINT `models_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE
-) ENGINE=InnoDB AUTO_INCREMENT=44 DEFAULT CHARSET=utf8;
+) ENGINE=InnoDB AUTO_INCREMENT=42 DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -609,9 +607,9 @@ DROP TABLE IF EXISTS `objects`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `objects` (
-  `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `uuid` char(36) NOT NULL,
+  `asset_id` char(36) NOT NULL,
   `object_category_id` int(11) unsigned DEFAULT NULL,
-  `asset_id` int(11) unsigned DEFAULT NULL,
   `rolf_tag_id` int(11) unsigned DEFAULT NULL,
   `mode` tinyint(4) DEFAULT '1',
   `scope` tinyint(4) DEFAULT '1',
@@ -632,16 +630,17 @@ CREATE TABLE `objects` (
   `updater` varchar(255) DEFAULT NULL,
   `updated_at` datetime DEFAULT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
-  PRIMARY KEY (`id`),
+  PRIMARY KEY (`uuid`),
   KEY `object_category_id` (`object_category_id`),
-  KEY `asset_id` (`asset_id`),
   KEY `rolf_tag_id` (`rolf_tag_id`),
   KEY `anr_id` (`anr_id`),
+  KEY `asset_id` (`asset_id`),
+  KEY `uuid` (`uuid`),
   CONSTRAINT `objects_ibfk_2` FOREIGN KEY (`object_category_id`) REFERENCES `objects_categories` (`id`) ON DELETE SET NULL,
-  CONSTRAINT `objects_ibfk_3` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`id`) ON DELETE CASCADE,
   CONSTRAINT `objects_ibfk_5` FOREIGN KEY (`rolf_tag_id`) REFERENCES `rolf_tags` (`id`) ON DELETE SET NULL,
-  CONSTRAINT `objects_ibfk_7` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE
+  CONSTRAINT `objects_ibfk_7` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
-) ENGINE=InnoDB AUTO_INCREMENT=1004 DEFAULT CHARSET=utf8;
+  CONSTRAINT `objects_ibfk_8` FOREIGN KEY (`asset_id`) REFERENCES `assets` (`uuid`) ON DELETE CASCADE
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -685,9 +684,9 @@ DROP TABLE IF EXISTS `objects_objects`;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `objects_objects` (
   `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `child_id` char(36) DEFAULT NULL,
+  `father_id` char(36) DEFAULT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
-  `father_id` int(11) unsigned DEFAULT NULL,
-  `child_id` int(11) unsigned DEFAULT NULL,
   `creator` varchar(255) DEFAULT NULL,
   `created_at` datetime DEFAULT NULL,
   `updater` varchar(255) DEFAULT NULL,
@@ -698,8 +697,8 @@ CREATE TABLE `objects_objects` (
   KEY `father_id` (`father_id`),
   KEY `child_id` (`child_id`),
   CONSTRAINT `objects_objects_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `objects_objects_ibfk_2` FOREIGN KEY (`father_id`) REFERENCES `objects` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `objects_objects_ibfk_2` FOREIGN KEY (`father_id`) REFERENCES `objects` (`uuid`) ON DELETE CASCADE,
-  CONSTRAINT `objects_objects_ibfk_3` FOREIGN KEY (`child_id`) REFERENCES `objects` (`id`) ON DELETE CASCADE
+  CONSTRAINT `objects_objects_ibfk_3` FOREIGN KEY (`child_id`) REFERENCES `objects` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB AUTO_INCREMENT=665 DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -978,7 +977,7 @@ CREATE TABLE `soacategory` (
   PRIMARY KEY (`id`),
   KEY `referential_uuid` (`referential_uuid`),
   CONSTRAINT `soacategory_ibfk_1` FOREIGN KEY (`referential_uuid`) REFERENCES `referentials` (`uuid`) ON DELETE CASCADE
-) ENGINE=InnoDB AUTO_INCREMENT=78 DEFAULT CHARSET=utf8;
+) ENGINE=InnoDB AUTO_INCREMENT=89 DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -1013,7 +1012,7 @@ DROP TABLE IF EXISTS `threats`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `threats` (
-  `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `uuid` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
   `theme_id` int(11) unsigned DEFAULT NULL,
   `mode` tinyint(4) DEFAULT '1',
@@ -1037,13 +1036,14 @@ CREATE TABLE `threats` (
   `created_at` datetime DEFAULT NULL,
   `updater` varchar(255) DEFAULT NULL,
   `updated_at` datetime DEFAULT NULL,
-  PRIMARY KEY (`id`),
+  PRIMARY KEY (`uuid`),
   UNIQUE KEY `anr_id` (`anr_id`,`code`),
   KEY `anr_id_2` (`anr_id`),
   KEY `threat_theme_id` (`theme_id`),
+  KEY `uuid` (`uuid`),
   CONSTRAINT `threats_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE,
   CONSTRAINT `threats_ibfk_2` FOREIGN KEY (`theme_id`) REFERENCES `themes` (`id`) ON DELETE SET NULL
-) ENGINE=InnoDB AUTO_INCREMENT=211 DEFAULT CHARSET=utf8;
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -1054,15 +1054,13 @@ DROP TABLE IF EXISTS `threats_models`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `threats_models` (
-  `threat_id` int(11) unsigned NOT NULL,
   `model_id` int(11) unsigned NOT NULL,
+  `threat_id` char(36) NOT NULL,
   PRIMARY KEY (`threat_id`,`model_id`),
-  KEY `threat_id` (`threat_id`),
   KEY `model_id` (`model_id`),
-  CONSTRAINT `threats_models_ibfk_1` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`id`),
   CONSTRAINT `threats_models_ibfk_2` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`),
-  CONSTRAINT `threats_models_ibfk_3` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `threats_models_ibfk_4` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `threats_models_ibfk_4` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`) ON DELETE CASCADE
+  CONSTRAINT `threats_models_ibfk_5` FOREIGN KEY (`threat_id`) REFERENCES `threats` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
@@ -1074,7 +1072,7 @@ DROP TABLE IF EXISTS `vulnerabilities`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `vulnerabilities` (
-  `id` int(11) unsigned NOT NULL AUTO_INCREMENT,
+  `uuid` char(36) NOT NULL,
   `anr_id` int(11) unsigned DEFAULT NULL,
   `mode` tinyint(4) DEFAULT '1',
   `code` char(100) DEFAULT NULL,
@@ -1091,11 +1089,12 @@ CREATE TABLE `vulnerabilities` (
   `created_at` datetime DEFAULT NULL,
   `updater` varchar(255) DEFAULT NULL,
   `updated_at` datetime DEFAULT NULL,
-  PRIMARY KEY (`id`),
+  PRIMARY KEY (`uuid`),
   UNIQUE KEY `anr_id` (`anr_id`,`code`),
   KEY `anr_id_2` (`anr_id`),
+  KEY `uuid` (`uuid`),
   CONSTRAINT `vulnerabilities_ibfk_1` FOREIGN KEY (`anr_id`) REFERENCES `anrs` (`id`) ON DELETE CASCADE
-) ENGINE=InnoDB AUTO_INCREMENT=5746 DEFAULT CHARSET=utf8;
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 
 --
@@ -1106,15 +1105,13 @@ DROP TABLE IF EXISTS `vulnerabilities_models`;
 /*!40101 SET @saved_cs_client     = @@character_set_client */;
 /*!40101 SET character_set_client = utf8 */;
 CREATE TABLE `vulnerabilities_models` (
-  `vulnerability_id` int(11) unsigned NOT NULL,
   `model_id` int(11) unsigned NOT NULL,
+  `vulnerability_id` char(36) NOT NULL,
   PRIMARY KEY (`vulnerability_id`,`model_id`),
-  KEY `vulnerability_id` (`vulnerability_id`),
   KEY `model_id` (`model_id`),
-  CONSTRAINT `vulnerabilities_models_ibfk_1` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`id`),
   CONSTRAINT `vulnerabilities_models_ibfk_2` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`),
-  CONSTRAINT `vulnerabilities_models_ibfk_3` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`id`) ON DELETE CASCADE,
+  CONSTRAINT `vulnerabilities_models_ibfk_4` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`) ON DELETE CASCADE,
-  CONSTRAINT `vulnerabilities_models_ibfk_4` FOREIGN KEY (`model_id`) REFERENCES `models` (`id`) ON DELETE CASCADE
+  CONSTRAINT `vulnerabilities_models_ibfk_5` FOREIGN KEY (`vulnerability_id`) REFERENCES `vulnerabilities` (`uuid`) ON DELETE CASCADE
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8;
 /*!40101 SET character_set_client = @saved_cs_client */;
 /*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */;
@@ -1127,4 +1124,4 @@ CREATE TABLE `vulnerabilities_models` (
 /*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */;
 /*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
 
--- Dump completed on 2019-04-24 10:31:41
+-- Dump completed on 2019-09-12 11:01:07

init_autoloader.php

@@ -1,54 +0,0 @@
-<?php
-/**
- * Zend Framework (http://framework.zend.com/)
- *
- * @link      http://github.com/zendframework/ZendSkeletonApplication for the canonical source repository
- * @copyright Copyright (c) 2005-2014 Zend Technologies USA Inc. (http://www.zend.com)
- * @license   http://framework.zend.com/license/new-bsd New BSD License
- */
-
-/**
- * This autoloading setup is really more complicated than it needs to be for most
- * applications. The added complexity is simply to reduce the time it takes for
- * new developers to be productive with a fresh skeleton. It allows autoloading
- * to be correctly configured, regardless of the installation method and keeps
- * the use of composer completely optional. This setup should work fine for
- * most users, however, feel free to configure autoloading however you'd like.
- */
-
-// Composer autoloading
-if (file_exists('vendor/autoload.php')) {
-    $loader = include 'vendor/autoload.php';
-}
-
-if (class_exists('Zend\Loader\AutoloaderFactory')) {
-    return;
-}
-
-$zf2Path = false;
-
-if (is_dir('vendor/ZF2/library')) {
-    $zf2Path = 'vendor/ZF2/library';
-} elseif (getenv('ZF2_PATH')) {      // Support for ZF2_PATH environment variable or git submodule
-    $zf2Path = getenv('ZF2_PATH');
-} elseif (get_cfg_var('zf2_path')) { // Support for zf2_path directive value
-    $zf2Path = get_cfg_var('zf2_path');
-}
-
-if ($zf2Path) {
-    if (isset($loader)) {
-        $loader->add('Zend', $zf2Path);
-        $loader->add('ZendXml', $zf2Path);
-    } else {
-        include $zf2Path . '/Zend/Loader/AutoloaderFactory.php';
-        Zend\Loader\AutoloaderFactory::factory(array(
-            'Zend\Loader\StandardAutoloader' => array(
-                'autoregister_zf' => true
-            )
-        ));
-    }
-}
-
-if (!class_exists('Zend\Loader\AutoloaderFactory')) {
-    throw new RuntimeException('Unable to load ZF2. Run `php composer.phar install` or define a ZF2_PATH environment variable.');
-}

package.json

@@ -1,7 +1,7 @@
 {
   "name": "MONARC",
-  "version": "2.8.2",
+  "version": "2.9.1",
-  "description": "MONARC Frontoffice App",
+  "description": "Monarc front office application",
   "private": true,
   "repository": {
     "type": "git",

public/index.php

@@ -1,24 +1,34 @@
 <?php
-/**
+
- * This makes our life easier when dealing with paths. Everything is relative
+use Zend\Mvc\Application;
- * to the application root now.
+
- */
 chdir(dirname(__DIR__));
 
 // Decline static file requests back to the PHP built-in webserver
-if (php_sapi_name() === 'cli-server' && is_file(__DIR__ . parse_url($_SERVER['REQUEST_URI'], PHP_URL_PATH))) {
+if (php_sapi_name() === 'cli-server') {
-    return false;
+    $path = realpath(__DIR__ . parse_url($_SERVER['REQUEST_URI'], PHP_URL_PATH));
+    if (__FILE__ !== $path && is_file($path)) {
+        return false;
+    }
+    unset($path);
 }
 
-/**
- * Default Timezone
- */
 if(date_default_timezone_get() != ini_get('date.timezone')){
     date_default_timezone_set('Europe/Luxembourg');
 }
 
-// Setup autoloading
+require 'vendor/autoload.php';
-require 'init_autoloader.php';
 
-// Run the application!
+if (! class_exists(Application::class)) {
-Zend\Mvc\Application::init(require 'config/application.config.php')->run();
+    throw new RuntimeException(
+        "Unable to load application.\n"
+        . "- Type `composer install` if you are developing locally.\n"
+    );
+}
+
+$appConfig = require 'config/application.config.php';
+if (file_exists('config/development.config.php')) {
+    $appConfig = Zend\Stdlib\ArrayUtils::merge($appConfig, include 'config/development.config.php');
+}
+
+Application::init($appConfig)->run();

scripts/checkout.sh

@@ -1,18 +0,0 @@
-#!/bin/bash
-
-checkout_if_exists() {
-	if [ -d $1 ]; then
-		pushd $1 >/dev/null
-		git checkout $2
-		popd >/dev/null
-	fi
-}
-
-
-checkout_if_exists . $1
-checkout_if_exists module/MonarcCore $1
-checkout_if_exists module/MonarcBO $1
-checkout_if_exists module/MonarcFO $1
-checkout_if_exists node_modules/ng_backoffice $1
-checkout_if_exists node_modules/ng_client $1
-checkout_if_exists node_modules/ng_anr $1

scripts/client-upgrade-db.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 
 # Usage: ./scripts/client-upgrade-db.sh <module> <hostname> <user> <password> <db>
-# Example: ./scripts/client-upgrade-db.sh MonarcBO localhost root derp monarc_backoffice
+# Example: ./scripts/client-upgrade-db.sh Monarc/BackOffice localhost root derp monarc_backoffice
 
 MODULE=$1
 SQLHOST=$2
@@ -11,20 +11,20 @@ SQLBASE=$5
 
 path=""
 case $MODULE in
-    "MonarcCore"|"core")
+    "Monarc/Core"|"core")
-        path="module/MonarcCore"
+        path="module/Monarc/Core"
         if [ ! -d $path ]; then
             path="vendor/monarc/core"
         fi
         ;;
-    "MonarcFO"|"frontoffice")
+    "Monarc/FrontOffice"|"frontoffice")
-        path="module/MonarcFO"
+        path="module/Monarc/FrontOffice"
         if [ ! -d $path ]; then
             path="vendor/monarc/frontoffice"
         fi
         ;;
-    "MonarcBO"|"backoffice")
+    "Monarc/BackOffice"|"backoffice")
-        path="module/MonarcBO"
+        path="module/Monarc/BackOffice"
         if [ ! -d $path ]; then
             path="vendor/monarc/backoffice"
         fi

scripts/compile_translations.sh

@@ -1,27 +1,12 @@
 #!/bin/bash
 
-if [ -d node_modules/ng_backoffice ]; then
+pushd node_modules/ng_client
-	pushd node_modules/ng_backoffice
+grunt compile_translations
-	grunt compile_translations
+grunt concat
-	grunt concat
 
-	if [ -d po ]; then
+if [ -d po ]; then
-		for i in $(ls po/*\.po); do
+  for i in $(ls po/*\.po); do
-			l=$(basename $i .po)
+    l=$(basename $i .po)
-			msgfmt -o ./po/$l.mo -v ./po/$l.po
+    msgfmt -o ./po/$l.mo -v ./po/$l.po
-		done;
+  done;
-	fi
-fi
-
-if [ -d node_modules/ng_client ]; then
-	pushd node_modules/ng_client
-	grunt compile_translations
-	grunt concat
-
-	if [ -d po ]; then
-		for i in $(ls po/*\.po); do
-			l=$(basename $i .po)
-			msgfmt -o ./po/$l.mo -v ./po/$l.po
-		done;
-	fi
 fi

scripts/extract_translations.sh

@@ -1,22 +1,9 @@
 #!/bin/bash
 
-if [ -d node_modules/ng_backoffice ]; then
+pushd node_modules/ng_client
-	pushd node_modules/ng_backoffice
 
-	if [ -f node_modules/.bin/grunt ]; then
+if [ -f node_modules/.bin/grunt ]; then
-		node_modules/.bin/grunt extract_translations
+  node_modules/.bin/grunt extract_translations
-	else
+else
-		grunt extract_translations
+  grunt extract_translations
-	fi
-fi
-
-
-if [ -d node_modules/ng_client ]; then
-	pushd node_modules/ng_client
-
-	if [ -f node_modules/.bin/grunt ]; then
-		node_modules/.bin/grunt extract_translations
-	else
-		grunt extract_translations
-	fi
 fi

scripts/get_deliverable.sh

@@ -1,13 +0,0 @@
-# ./get_deliverable.sh <token> <anr_id> <model_id>
-clear
-echo "======"
-echo http://monarcfo/api/client-anr/$2/deliverable?model=$3
-echo "======"
-
-curl -H "Token: $1" http://monarcfo/api/client-anr/$2/deliverable?model=$3 > /tmp/exported.docx 2>/dev/null
-
-if grep "errors" /tmp/exported.docx; then
-	cat /tmp/exported.docx
-fi
-
-echo ""

scripts/link_modules_resources.sh

@@ -37,68 +37,31 @@ else
 	find -L public/img -type l -exec rm {} \;
 fi
 
-# Link modules resources
+# Link modules resources. TODO: Replace with Grunt tasks to minify the JS and CSS.
-if [ -d node_modules/ng_backoffice ]; then
+cd public/views/ && find ../../node_modules/ng_client/views -name "*.html" -exec ln -s {} \; 2>/dev/null
-	cd public/views/ && find ../../node_modules/ng_backoffice/views -maxdepth 1 -name "*.html" -exec ln -s {} \; 2>/dev/null
+cd dialogs/ && find ../../../node_modules/ng_client/views/dialogs -maxdepth 1 -name "*.html" -exec ln -s {} \; 2>/dev/null
-	cd dialogs/ && find ../../../node_modules/ng_backoffice/views/dialogs -maxdepth 1 -name "*.html" -exec ln -s {} \; 2>/dev/null
+cd ../../js/ && find ../../node_modules/ng_client/src -name "*" -exec ln -s {} \; 2>/dev/null
-	cd ../partials/ && find ../../../node_modules/ng_backoffice/views/partials -maxdepth 1 -name "*.html" -exec ln -s {} \; 2>/dev/null
+cd ../css/ && find ../../node_modules/ng_client/css -name "*" -exec ln -s {} \; 2>/dev/null
-	cd ../../js/ && find ../../node_modules/ng_backoffice/src -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
+cd ../img/ && find ../../node_modules/ng_client/img -name "*" -exec ln -s {} \; 2>/dev/null
-	cd ../css/ && find ../../node_modules/ng_backoffice/css -name "*" -exec ln -s {} \; 2>/dev/null
+cd ../flags/ && find ../../node_modules/ng_client/node_modules/ng-country-flags/dist/flags -mindepth 1 -type d -exec ln -s {} \; 2>/dev/null
-	cd ../img/ && find ../../node_modules/ng_backoffice/img -name "*" -exec ln -s {} \; 2>/dev/null
-    cd ../flags/ && find ../../node_modules/ng_backoffice/node_modules/ng-country-flags/dist/flags -mindepth 1 -type d -exec ln -s {} \; 2>/dev/null
 
-	if [ -d ../../node_modules/ng_anr ]; then
+cd ../js/
-		cd ../js/
+mkdir -p anr
-		mkdir -p anr
+cd anr && find ../../../node_modules/ng_anr/src -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
-		cd anr && find ../../../node_modules/ng_anr/src -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
+cd ..
-		cd ..
 
-		cd ../views/
+cd ../views/
-		mkdir -p anr
+mkdir -p anr
-		cd anr && find ../../../node_modules/ng_anr/views -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
+cd anr && find ../../../node_modules/ng_anr/views -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
-		cd ..
+cd ..
 
-		cd ../css/
+cd ../css/
-		mkdir -p anr
+mkdir -p anr
-		cd anr && find ../../../node_modules/ng_anr/css -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
+cd anr && find ../../../node_modules/ng_anr/css -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
-		cd ..
+cd ..
-	fi
 
-	cd ../..
+cd ../..
 
-	pushd node_modules/ng_backoffice
+pushd node_modules/ng_client
-	grunt concat
+grunt concat
-	popd
+popd
-fi
-
-if [ -d node_modules/ng_client ]; then
-	cd public/views/ && find ../../node_modules/ng_client/views -name "*.html" -exec ln -s {} \; 2>/dev/null
-	cd dialogs/ && find ../../../node_modules/ng_client/views/dialogs -maxdepth 1 -name "*.html" -exec ln -s {} \; 2>/dev/null
-	cd ../../js/ && find ../../node_modules/ng_client/src -name "*" -exec ln -s {} \; 2>/dev/null
-	cd ../css/ && find ../../node_modules/ng_client/css -name "*" -exec ln -s {} \; 2>/dev/null
-	cd ../img/ && find ../../node_modules/ng_client/img -name "*" -exec ln -s {} \; 2>/dev/null
-	cd ../flags/ && find ../../node_modules/ng_client/node_modules/ng-country-flags/dist/flags -mindepth 1 -type d -exec ln -s {} \; 2>/dev/null
-
-	if [ -d ../../node_modules/ng_anr ]; then
-		cd ../js/
-		mkdir -p anr
-		cd anr && find ../../../node_modules/ng_anr/src -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
-		cd ..
-
-		cd ../views/
-		mkdir -p anr
-		cd anr && find ../../../node_modules/ng_anr/views -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
-		cd ..
-
-		cd ../css/
-		mkdir -p anr
-		cd anr && find ../../../node_modules/ng_anr/css -type f -maxdepth 1 -name "*" -exec ln -s {} \; 2>/dev/null
-		cd ..
-	fi
-
-	cd ../..
-
-	pushd node_modules/ng_client
-	grunt concat
-	popd
-fi

scripts/post-install.sh

@@ -1,12 +0,0 @@
-#!/bin/bash
-
-npm install
-
-cd node_modules/ng_backoffice
-npm install
-
-cd ../..
-
-# Compile stuff needed for the minified frontend
-./scripts/compile_translations.sh
-./scripts/link_modules_resources.sh

scripts/seed-db.sh

@@ -1,14 +1,5 @@
 #!/bin/bash
 
-if [ -d module/MonarcCore ]; then
+php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/Monarc/Core/migrations/phinx.php
-	php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcCore/migrations/phinx.php
-fi
-
-if [ -d module/MonarcBO ]; then
-	php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcBO/migrations/phinx.php
-fi
-
-if [ -d module/MonarcFO ]; then
-	php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcFO/migrations/phinx.php
-fi
 
+php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/Monarc/FrontOffice/migrations/phinx.php

scripts/update-all.sh

@@ -1,5 +1,9 @@
 #!/usr/bin/env bash
 
+RED='\033[0;31m'
+GREEN='\033[0;32m'
+NC='\033[0m' # No Color
+
 bypass=0
 forceClearCache=0
 while getopts "hbc" option
@@ -31,14 +35,8 @@ pull_if_exists() {
 }
 
 migrate_module() {
-	if [[ -d $2 ]]; then
+	if [[ -d $1 ]]; then
-		$1 ./vendor/robmorgan/phinx/bin/phinx migrate -c ./$2/migrations/phinx.php
+		php ./vendor/robmorgan/phinx/bin/phinx migrate -c ./$1/migrations/phinx.php
-		if [[ -d "${2}/hooks" && -f "${2}/.git/hooks/pre-commit.sh" ]]; then
-			cd $2/.git/hooks
-			ln -s ../../hooks/pre-commit.sh pre-commit 2>/dev/null
-			chmod u+x pre-commit
-			cd $2
-		fi
 	fi
 }
 
@@ -47,70 +45,35 @@ if [[ ! -f "config/autoload/local.php" && $bypass -eq 0 ]]; then
 	exit 1
 fi
 
-phpcommand=`command -v php`
+git pull
-if [[ -z "$phpcommand" ]]; then
-	echo "PHP must be installed"
-	exit 1
-fi
-
-gitcommand=`command -v git`
-if [[ -z "$gitcommand" ]]; then
-	echo "Git must be installed"
-	exit 1
-fi
-
-$gitcommand pull
 
 if [ $? != 0 ]; then
        echo "A problem occurred while retrieving remote files from repository."
        exit 1
 fi
 
-composercommand=`command -v composer`
+composer install -o
-if [[ -z "$composercommand" ]]; then
+
-	if [[ ! -f "composer.phar" ]]; then
+pathCore="module/Monarc/Core"
-		# https://getcomposer.org/download/
+pathFO="module/Monarc/FrontOffice"
-		# https://getcomposer.org/doc/faqs/how-to-install-composer-programmatically.md
+
-		EXPECTED_SIGNATURE=$(wget -q -O - https://composer.github.io/installer.sig)
+if [[ $bypass -eq 0 ]]; then
-		$phpcommand -r "copy('https://getcomposer.org/installer', 'composer-setup.php');"
+	if [ -e data/backup/credentialsmysql.cnf ]; then
-		ACTUAL_SIGNATURE=$($phpcommand -r "echo hash_file('SHA384', 'composer-setup.php');")
+		backupdir=data/backup/$(date +"%Y%m%d_%H%M%S")
-		if [[ "$EXPECTED_SIGNATURE" != "$ACTUAL_SIGNATURE" ]]; then
+		mkdir $backupdir
-			echo "Error download composer (different hash)"
+		echo -e "${GREEN}Dumping database to $backupdir...${NC}"
-			rm composer-setup.php
+		mysqldump --defaults-file=data/backup/credentialsmysql.cnf --databases monarc_common > $backupdir/dump-common.sql
-			exit 1
+		mysqldump --defaults-file=data/backup/credentialsmysql.cnf --databases monarc_cli > $backupdir/dump-cli.sql
-		fi
+	else
-		rm composer-setup.php
+		echo -e "${GREEN}Database backup not configured. Skipping.${NC}"
-		$phpcommand composer-setup.php --quiet
 	fi
-	$phpcommand composer.phar update -o
-else
-	$composercommand update -o
-fi
 
-
+	migrate_module $pathCore
-currentPath=`pwd`
+	migrate_module $pathFO
-pathCore="module/MonarcCore"
-if [ -d $pathCore ]; then
-	pull_if_exists $pathCore
-else
-	pathCore="vendor/monarc/core"
-fi
-pathBO="module/MonarcBO"
-if [ -d $pathBO ]; then
-	pull_if_exists $pathBO
-else
-	pathBO="vendor/monarc/backoffice"
-fi
-pathFO="module/MonarcFO"
-if [ -d $pathFO ]; then
-	pull_if_exists $pathFO
-else
-	pathFO="vendor/monarc/frontoffice"
 fi
 
 if [[ -d node_modules && -d node_modules/ng_anr ]]; then
 	if [[ -d node_modules/ng_anr/.git ]]; then
-		pull_if_exists node_modules/ng_backoffice
 		pull_if_exists node_modules/ng_client
 		pull_if_exists node_modules/ng_anr
 	else
@@ -120,43 +83,19 @@ else
 	npm install
 fi
 
-if [[ $bypass -eq 0 ]]; then
+cd node_modules/ng_client
-	if [ -e data/backup/credentialsmysql.cnf ]; then
+npm install
-		backupdir=data/backup/$(date +"%Y%m%d_%H%M%S")
+cd ../..
-		mkdir $backupdir
-		echo -e "\e[32mDumping database to $backupdir...\e[0m"
-		mysqldump --defaults-file=data/backup/credentialsmysql.cnf --databases monarc_common > $backupdir/dump-common.sql
-		mysqldump --defaults-file=data/backup/credentialsmysql.cnf --databases monarc_cli > $backupdir/dump-cli.sql
-	else
-		echo -e "\e[93mDatabase backup not configured. Skipping.\e[0m"
-	fi
-
-	migrate_module $phpcommand $pathCore
-	migrate_module $phpcommand $pathBO
-	migrate_module $phpcommand $pathFO
-fi
-
-if [ -d node_modules/ng_backoffice ]; then
-	cd node_modules/ng_backoffice
-	npm install
-	cd ../..
-fi
-
-if [ -d node_modules/ng_client ]; then
-	cd node_modules/ng_client
-	npm install
-	cd ../..
-fi
 
 ./scripts/link_modules_resources.sh
 ./scripts/compile_translations.sh
 
 if [[ $forceClearCache -eq 1 ]]; then
 	# Clear doctrine cache
-	# Move to MonarcCore Module.php
+	# Move to Monarc/Core Module.php
-	$phpcommand ./public/index.php orm:clear-cache:metadata
+	php ./public/index.php orm:clear-cache:metadata
-	$phpcommand ./public/index.php orm:clear-cache:query
+	php ./public/index.php orm:clear-cache:query
-	$phpcommand ./public/index.php orm:clear-cache:result
+	php ./public/index.php orm:clear-cache:result
 
 	# Clear ZF2 cache
 	touch ./data/cache/upgrade && chmod 777 ./data/cache/upgrade
@@ -166,3 +105,5 @@ if [[ $forceClearCache -eq 0 && $bypass -eq 0 ]]; then
 	# Clear ZF2 cache
 	touch ./data/cache/upgrade && chmod 777 ./data/cache/upgrade
 fi
+
+exit 0

scripts/upgrade-db.sh

@@ -1,11 +1,5 @@
 #!/bin/bash
 
-php ./vendor/robmorgan/phinx/bin/phinx migrate -c ./module/MonarcCore/migrations/phinx.php
+php ./vendor/robmorgan/phinx/bin/phinx migrate -c ./module/Monarc/Core/migrations/phinx.php
 
-if [ -d module/MonarcBO ]; then
+php ./vendor/robmorgan/phinx/bin/phinx migrate -c ./module/Monarc/FrontOffice/migrations/phinx.php
-        php ./vendor/robmorgan/phinx/bin/phinx migrate -c ./module/MonarcBO/migrations/phinx.php
-fi
-
-if [ -d module/MonarcFO ]; then
-        php ./vendor/robmorgan/phinx/bin/phinx migrate -c ./module/MonarcFO/migrations/phinx.php
-fi

scripts/upgrade-url.sh

@@ -1,19 +0,0 @@
-#!/bin/bash
-
-oldurl_if_exists() {
-	if [ -d $1 ]; then
-		pushd $1 >/dev/null
-		sed -i -e 's/CASES-LU/monarc-project/g' ./.git/config $2
-		git config core.fileMode false
-		popd >/dev/nul
-	fi
-}
-
-
-oldurl_if_exists . $1
-oldurl_if_exists module/MonarcCore $1
-oldurl_if_exists module/MonarcBO $1
-oldurl_if_exists module/MonarcFO $1
-oldurl_if_exists node_modules/ng_backoffice $1
-oldurl_if_exists node_modules/ng_client $1
-oldurl_if_exists node_modules/ng_anr $1

vagrant/README.rst

@@ -26,7 +26,6 @@ MONARC will be automatically deployed in an Ubuntu Bionic Server.
 
     $ git clone https://github.com/monarc-project/MonarcAppFO
     $ cd MonarcAppFO/vagrant
-    $ export GITHUB_AUTH_TOKEN=<your-github-auth-token>
     $ vagrant up
 
 Once the VM will be configured by Vagrant, go to the address

vagrant/Vagrantfile

@@ -11,7 +11,7 @@ Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
 
   # Every Vagrant virtual environment requires a box to build off of.
   config.vm.box = "ubuntu/bionic64"
-  config.vm.provision :shell, path: "bootstrap.sh", args: "#{ENV['GITHUB_AUTH_TOKEN']}"
+  config.vm.provision :shell, path: "bootstrap.sh"
 
   # Disable automatic box update checking. If you disable this, then
   # boxes will only be checked for updates when the user runs
@@ -22,6 +22,7 @@ Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
   # within the machine from a port on the host machine. In the example below,
   # accessing "localhost:8080" will access port 80 on the guest machine.
   config.vm.network :forwarded_port, guest: 80, host: 5001
+  config.vm.network :forwarded_port, guest: 3306, host: 3306
 
   # Create a private network, which allows host-only access to the machine
   # using a specific IP.

vagrant/bootstrap.sh

@@ -1,20 +1,17 @@
 #! /usr/bin/env bash
 
-# Variables
-GITHUB_AUTH_TOKEN=$1
-
-TAG=''
-
 PATH_TO_MONARC='/home/ubuntu/monarc'
-ENVIRONMENT='PRODUCTION'
+
+APPENV='local'
+ENVIRONMENT='development'
 
 DBHOST='localhost'
 DBNAME_COMMON='monarc_common'
 DBNAME_CLI='monarc_cli'
 DBUSER_ADMIN='root'
-DBPASSWORD_ADMIN="$(openssl rand -hex 32)"
+DBPASSWORD_ADMIN="root"
 DBUSER_MONARC='sqlmonarcuser'
-DBPASSWORD_MONARC="$(openssl rand -hex 32)"
+DBPASSWORD_MONARC="sqlmonarcuser"
 
 upload_max_filesize=200M
 post_max_size=50M
@@ -22,6 +19,8 @@ max_execution_time=100
 max_input_time=223
 memory_limit=512M
 PHP_INI=/etc/php/7.2/apache2/php.ini
+X_DEBUG_CFG=/etc/php/7.2/apache2/conf.d/20-xdebug.ini
+MARIA_DB_CFG=/etc/mysql/mariadb.conf.d/50-server.cnf
 
 export DEBIAN_FRONTEND=noninteractive
 export LANGUAGE=en_US.UTF-8
@@ -30,17 +29,17 @@ export LC_ALL=en_US.UTF-8
 locale-gen en_US.UTF-8
 dpkg-reconfigure locales
 
+
 echo -e "\n--- Installing now… ---\n"
 
 echo -e "\n--- Updating packages list… ---\n"
-apt-get update
+apt-get update && apt-get upgrade
 
 echo -e "\n--- Install base packages… ---\n"
 apt-get -y install vim zip unzip git gettext curl gsfonts > /dev/null
 
+
 echo -e "\n--- Install MariaDB specific packages and settings… ---\n"
-# echo "mysql-server mysql-server/root_password password $DBPASSWORD_ADMIN" | debconf-set-selections
-# echo "mysql-server mysql-server/root_password_again password $DBPASSWORD_ADMIN" | debconf-set-selections
 apt-get -y install mariadb-server mariadb-client > /dev/null
 # Secure the MariaDB installation (especially by setting a strong root password)
 systemctl restart mariadb.service > /dev/null
@@ -68,10 +67,20 @@ expect -f - <<-EOF
   send -- "y\r"
   expect eof
 EOF
-sudo apt-get purge -y expect > /dev/null 2>&1
+sudo apt-get purge -y expect php-xdebug > /dev/null 2>&1
+
+echo -e "\n--- Configuring… ---\n"
+sed -i "s/skip-external-locking/#skip-external-locking/g" $MARIA_DB_CFG
+sed -i "s/.*bind-address.*/bind-address = 0.0.0.0/" $MARIA_DB_CFG
+
+echo -e "\n--- Setting up our MariaDB user for MONARC… ---\n"
+mysql -u root -p$DBPASSWORD_ADMIN -e "CREATE USER '$DBUSER_MONARC'@'%' IDENTIFIED BY '$DBPASSWORD_MONARC';"
+mysql -u root -p$DBPASSWORD_ADMIN -e "GRANT ALL PRIVILEGES ON * . * TO '$DBUSER_MONARC'@'%';"
+mysql -u root -p$DBPASSWORD_ADMIN -e "FLUSH PRIVILEGES;"
+systemctl restart mariadb.service > /dev/null
 
 echo -e "\n--- Installing PHP-specific packages… ---\n"
-apt-get -y install php apache2 libapache2-mod-php php-curl php-gd php-mysql php-pear php-apcu php-xml php-mbstring php-intl php-imagick php-zip > /dev/null
+apt-get -y install php apache2 libapache2-mod-php php-curl php-gd php-mysql php-pear php-apcu php-xml php-mbstring php-intl php-imagick php-zip php-xdebug > /dev/null
 
 echo -e "\n--- Configuring PHP… ---\n"
 for key in upload_max_filesize post_max_size max_execution_time max_input_time memory_limit
@@ -79,6 +88,14 @@ do
  sed -i "s/^\($key\).*/\1 = $(eval echo \${$key})/" $PHP_INI
 done
 
+echo -e "\n--- Configuring Xdebug for development ---\n"
+cat > $X_DEBUG_CFG <<EOF
+zend_extension=xdebug.so
+xdebug.remote_enable=1
+xdebug.remote_connect_back=1
+xdebug.idekey=IDEKEY
+EOF
+
 echo -e "\n--- Enabling mod-rewrite and ssl… ---\n"
 a2enmod rewrite > /dev/null 2>&1
 a2enmod ssl > /dev/null 2>&1
@@ -87,14 +104,6 @@ a2enmod headers > /dev/null 2>&1
 echo -e "\n--- Allowing Apache override to all ---\n"
 sudo sed -i "s/AllowOverride None/AllowOverride All/g" /etc/apache2/apache2.conf
 
-#echo -e "\n--- We want to see the PHP errors, turning them on ---\n"
-#sed -i "s/error_reporting = .*/error_reporting = E_ALL/" /etc/php/7.0/apache2/php.ini
-#sed -i "s/display_errors = .*/display_errors = On/" /etc/php/7.0/apache2/php.ini
-
-echo -e "\n--- Setting up our MariaDB user for MONARC… ---\n"
-mysql -u root -p$DBPASSWORD_ADMIN -e "CREATE USER '$DBUSER_MONARC'@'localhost' IDENTIFIED BY '$DBPASSWORD_MONARC';"
-mysql -u root -p$DBPASSWORD_ADMIN -e "GRANT ALL PRIVILEGES ON * . * TO '$DBUSER_MONARC'@'localhost';"
-mysql -u root -p$DBPASSWORD_ADMIN -e "FLUSH PRIVILEGES;"
 
 echo -e "\n--- Installing composer… ---\n"
 curl -sS https://getcomposer.org/installer | sudo php -- --install-dir=/usr/local/bin --filename=composer > /dev/null 2>&1
@@ -107,45 +116,34 @@ composer self-update
 echo -e "\n--- Installing MONARC… ---\n"
 cd $PATH_TO_MONARC
 git config core.fileMode false
-if [ "$TAG" != '' ]; then
-    # Checkout the latest tag
-    #latestTag=$(git describe --tags `git rev-list --tags --max-count=1`)
-    git checkout $TAG
-fi
 
-echo -e "\n--- Retrieving MONARC libraries… ---\n"
+echo -e "\n--- Installing the dependencies… ---\n"
-composer config -g github-oauth.github.com $GITHUB_AUTH_TOKEN
 composer install -o
 
-# Modules
+
-mkdir module
+# Make modules symlinks.
-cd module
+mkdir -p module/Monarc
-ln -s ./../vendor/monarc/core MonarcCore
+cd module/Monarc
-ln -s ./../vendor/monarc/frontoffice MonarcFO
+ln -s ./../../vendor/monarc/core Core
-cd $PATH_TO_MONARC
+ln -s ./../../vendor/monarc/frontoffice FrontOffice
-cd module/MonarcFO/
-git config core.fileMode false
-cd $PATH_TO_MONARC
-cd module/MonarcCore/
-git config core.fileMode false
 cd $PATH_TO_MONARC
 
-# Interfaces
+
+# Front-end
 mkdir node_modules
 cd node_modules
-git clone --config core.filemode=false https://github.com/monarc-project/ng-client.git ng_client > /dev/null 2>&1
+git clone --config core.fileMode=false https://github.com/monarc-project/ng-client.git ng_client > /dev/null 2>&1
 if [ $? -ne 0 ]; then
     echo "\nERROR: unable to clone the ng-client repository\n"
     exit 1;
 fi
-git clone --config core.filemode=false https://github.com/monarc-project/ng-anr.git ng_anr > /dev/null 2>&1
+git clone --config core.fileMode=false https://github.com/monarc-project/ng-anr.git ng_anr > /dev/null 2>&1
 if [ $? -ne 0 ]; then
     echo "\nERROR: unable to clone the ng-anr repository\n"
     exit 1;
 fi
 cd ..
 
-
 chown -R www-data $PATH_TO_MONARC
 chgrp -R www-data $PATH_TO_MONARC
 chmod -R 700 $PATH_TO_MONARC
@@ -170,7 +168,7 @@ cat > /etc/apache2/sites-enabled/000-default.conf <<EOF
        Header always set X-Frame-Options SAMEORIGIN
     </IfModule>
 
-    SetEnv APPLICATION_ENV $ENVIRONMENT
+    SetEnv APP_ENV $ENVIRONMENT
     SetEnv APP_DIR $PATH_TO_MONARC
 </VirtualHost>
 EOF
@@ -178,7 +176,9 @@ echo -e "\n--- Restarting Apache… ---\n"
 systemctl restart apache2.service > /dev/null
 
 
-echo -e "\n--- Configuration of MONARC data base connection ---\n"
+
+
+echo -e "\n--- Configuration of MONARC database connection ---\n"
 cat > config/autoload/local.php <<EOF
 <?php
 \$appdir = getenv('APP_DIR') ? getenv('APP_DIR') : '$PATH_TO_MONARC';
@@ -256,21 +256,31 @@ mysql -u $DBUSER_MONARC -p$DBPASSWORD_MONARC monarc_common < db-bootstrap/monarc
 mysql -u $DBUSER_MONARC -p$DBPASSWORD_MONARC monarc_common < db-bootstrap/monarc_data.sql > /dev/null
 
 
+
+
 echo -e "\n--- Installation of Grunt… ---\n"
 sudo apt-get -y install npm > /dev/null
 npm install -g grunt-cli > /dev/null
 
 
+
+
 echo -e "\n--- Update the project… ---\n"
 /bin/bash ./scripts/update-all.sh > /dev/null
 
 
+
+
 echo -e "\n--- Create initial user and client ---\n"
-php ./vendor/robmorgan/phinx/bin/phinx seed:run -c ./module/MonarcFO/migrations/phinx.php
+php ./bin/phinx seed:run -c ./module/Monarc/FrontOffice/migrations/phinx.php
+
+
 
 
 echo -e "\n--- Restarting Apache… ---\n"
 systemctl restart apache2.service > /dev/null
 
 
+
+
 echo -e "\n--- MONARC is ready! Point your Web browser to http://127.0.0.1:5001 ---\n"