From f31e65a749f84f8b3278c91784509d908d4fb342 Mon Sep 17 00:00:00 2001 From: Richard van der Hoff <1389908+richvdh@users.noreply.github.com> Date: Tue, 7 Apr 2020 23:06:39 +0100 Subject: [PATCH] bg update to clear out duplicate outbound_device_list_pokes (#7193) We seem to have some duplicates, which could do with being cleared out. --- changelog.d/7193.misc | 1 + .../storage/data_stores/main/client_ips.py | 16 ++-- synapse/storage/data_stores/main/devices.py | 73 +++++++++++++++- .../delta/58/02remove_dup_outbound_pokes.sql | 22 +++++ synapse/storage/database.py | 83 ++++++++++++++++++- tests/storage/test_database.py | 52 ++++++++++++ 6 files changed, 234 insertions(+), 13 deletions(-) create mode 100644 changelog.d/7193.misc create mode 100644 synapse/storage/data_stores/main/schema/delta/58/02remove_dup_outbound_pokes.sql create mode 100644 tests/storage/test_database.py diff --git a/changelog.d/7193.misc b/changelog.d/7193.misc new file mode 100644 index 0000000000..383a738e64 --- /dev/null +++ b/changelog.d/7193.misc @@ -0,0 +1 @@ +Add a background database update job to clear out duplicate `device_lists_outbound_pokes`. diff --git a/synapse/storage/data_stores/main/client_ips.py b/synapse/storage/data_stores/main/client_ips.py index e1ccb27142..92bc06919b 100644 --- a/synapse/storage/data_stores/main/client_ips.py +++ b/synapse/storage/data_stores/main/client_ips.py @@ -21,7 +21,7 @@ from twisted.internet import defer from synapse.metrics.background_process_metrics import wrap_as_background_process from synapse.storage._base import SQLBaseStore -from synapse.storage.database import Database +from synapse.storage.database import Database, make_tuple_comparison_clause from synapse.util.caches import CACHE_SIZE_FACTOR from synapse.util.caches.descriptors import Cache @@ -303,16 +303,10 @@ class ClientIpBackgroundUpdateStore(SQLBaseStore): # we'll just end up updating the same device row multiple # times, which is fine. - if self.database_engine.supports_tuple_comparison: - where_clause = "(user_id, device_id) > (?, ?)" - where_args = [last_user_id, last_device_id] - else: - # We explicitly do a `user_id >= ? AND (...)` here to ensure - # that an index is used, as doing `user_id > ? OR (user_id = ? AND ...)` - # makes it hard for query optimiser to tell that it can use the - # index on user_id - where_clause = "user_id >= ? AND (user_id > ? OR device_id > ?)" - where_args = [last_user_id, last_user_id, last_device_id] + where_clause, where_args = make_tuple_comparison_clause( + self.database_engine, + [("user_id", last_user_id), ("device_id", last_device_id)], + ) sql = """ SELECT diff --git a/synapse/storage/data_stores/main/devices.py b/synapse/storage/data_stores/main/devices.py index 4c5bea4a5c..ee3a2ab031 100644 --- a/synapse/storage/data_stores/main/devices.py +++ b/synapse/storage/data_stores/main/devices.py @@ -32,7 +32,11 @@ from synapse.logging.opentracing import ( ) from synapse.metrics.background_process_metrics import run_as_background_process from synapse.storage._base import SQLBaseStore, db_to_json, make_in_list_sql_clause -from synapse.storage.database import Database, LoggingTransaction +from synapse.storage.database import ( + Database, + LoggingTransaction, + make_tuple_comparison_clause, +) from synapse.types import Collection, get_verify_key_from_cross_signing_key from synapse.util.caches.descriptors import ( Cache, @@ -49,6 +53,8 @@ DROP_DEVICE_LIST_STREAMS_NON_UNIQUE_INDEXES = ( "drop_device_list_streams_non_unique_indexes" ) +BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES = "remove_dup_outbound_pokes" + class DeviceWorkerStore(SQLBaseStore): def get_device(self, user_id, device_id): @@ -714,6 +720,11 @@ class DeviceBackgroundUpdateStore(SQLBaseStore): self._drop_device_list_streams_non_unique_indexes, ) + # clear out duplicate device list outbound pokes + self.db.updates.register_background_update_handler( + BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES, self._remove_duplicate_outbound_pokes, + ) + @defer.inlineCallbacks def _drop_device_list_streams_non_unique_indexes(self, progress, batch_size): def f(conn): @@ -728,6 +739,66 @@ class DeviceBackgroundUpdateStore(SQLBaseStore): ) return 1 + async def _remove_duplicate_outbound_pokes(self, progress, batch_size): + # for some reason, we have accumulated duplicate entries in + # device_lists_outbound_pokes, which makes prune_outbound_device_list_pokes less + # efficient. + # + # For each duplicate, we delete all the existing rows and put one back. + + KEY_COLS = ["stream_id", "destination", "user_id", "device_id"] + last_row = progress.get( + "last_row", + {"stream_id": 0, "destination": "", "user_id": "", "device_id": ""}, + ) + + def _txn(txn): + clause, args = make_tuple_comparison_clause( + self.db.engine, [(x, last_row[x]) for x in KEY_COLS] + ) + sql = """ + SELECT stream_id, destination, user_id, device_id, MAX(ts) AS ts + FROM device_lists_outbound_pokes + WHERE %s + GROUP BY %s + HAVING count(*) > 1 + ORDER BY %s + LIMIT ? + """ % ( + clause, # WHERE + ",".join(KEY_COLS), # GROUP BY + ",".join(KEY_COLS), # ORDER BY + ) + txn.execute(sql, args + [batch_size]) + rows = self.db.cursor_to_dict(txn) + + row = None + for row in rows: + self.db.simple_delete_txn( + txn, "device_lists_outbound_pokes", {x: row[x] for x in KEY_COLS}, + ) + + row["sent"] = False + self.db.simple_insert_txn( + txn, "device_lists_outbound_pokes", row, + ) + + if row: + self.db.updates._background_update_progress_txn( + txn, BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES, {"last_row": row}, + ) + + return len(rows) + + rows = await self.db.runInteraction(BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES, _txn) + + if not rows: + await self.db.updates._end_background_update( + BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES + ) + + return rows + class DeviceStore(DeviceWorkerStore, DeviceBackgroundUpdateStore): def __init__(self, database: Database, db_conn, hs): diff --git a/synapse/storage/data_stores/main/schema/delta/58/02remove_dup_outbound_pokes.sql b/synapse/storage/data_stores/main/schema/delta/58/02remove_dup_outbound_pokes.sql new file mode 100644 index 0000000000..fdc39e9ba5 --- /dev/null +++ b/synapse/storage/data_stores/main/schema/delta/58/02remove_dup_outbound_pokes.sql @@ -0,0 +1,22 @@ +/* Copyright 2020 The Matrix.org Foundation C.I.C + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + + /* for some reason, we have accumulated duplicate entries in + * device_lists_outbound_pokes, which makes prune_outbound_device_list_pokes less + * efficient. + */ + +INSERT INTO background_updates (ordering, update_name, progress_json) + VALUES (5800, 'remove_dup_outbound_pokes', '{}'); diff --git a/synapse/storage/database.py b/synapse/storage/database.py index 715c0346dd..a7cd97b0b0 100644 --- a/synapse/storage/database.py +++ b/synapse/storage/database.py @@ -17,7 +17,17 @@ import logging import time from time import monotonic as monotonic_time -from typing import Any, Callable, Dict, Iterable, Iterator, List, Optional, Tuple +from typing import ( + Any, + Callable, + Dict, + Iterable, + Iterator, + List, + Optional, + Tuple, + TypeVar, +) from six import iteritems, iterkeys, itervalues from six.moves import intern, range @@ -1557,3 +1567,74 @@ def make_in_list_sql_clause( return "%s = ANY(?)" % (column,), [list(iterable)] else: return "%s IN (%s)" % (column, ",".join("?" for _ in iterable)), list(iterable) + + +KV = TypeVar("KV") + + +def make_tuple_comparison_clause( + database_engine: BaseDatabaseEngine, keys: List[Tuple[str, KV]] +) -> Tuple[str, List[KV]]: + """Returns a tuple comparison SQL clause + + Depending what the SQL engine supports, builds a SQL clause that looks like either + "(a, b) > (?, ?)", or "(a > ?) OR (a == ? AND b > ?)". + + Args: + database_engine + keys: A set of (column, value) pairs to be compared. + + Returns: + A tuple of SQL query and the args + """ + if database_engine.supports_tuple_comparison: + return ( + "(%s) > (%s)" % (",".join(k[0] for k in keys), ",".join("?" for _ in keys)), + [k[1] for k in keys], + ) + + # we want to build a clause + # (a > ?) OR + # (a == ? AND b > ?) OR + # (a == ? AND b == ? AND c > ?) + # ... + # (a == ? AND b == ? AND ... AND z > ?) + # + # or, equivalently: + # + # (a > ? OR (a == ? AND + # (b > ? OR (b == ? AND + # ... + # (y > ? OR (y == ? AND + # z > ? + # )) + # ... + # )) + # )) + # + # which itself is equivalent to (and apparently easier for the query optimiser): + # + # (a >= ? AND (a > ? OR + # (b >= ? AND (b > ? OR + # ... + # (y >= ? AND (y > ? OR + # z > ? + # )) + # ... + # )) + # )) + # + # + + clause = "" + args = [] # type: List[KV] + for k, v in keys[:-1]: + clause = clause + "(%s >= ? AND (%s > ? OR " % (k, k) + args.extend([v, v]) + + (k, v) = keys[-1] + clause += "%s > ?" % (k,) + args.append(v) + + clause += "))" * (len(keys) - 1) + return clause, args diff --git a/tests/storage/test_database.py b/tests/storage/test_database.py new file mode 100644 index 0000000000..5a77c84962 --- /dev/null +++ b/tests/storage/test_database.py @@ -0,0 +1,52 @@ +# -*- coding: utf-8 -*- +# Copyright 2020 The Matrix.org Foundation C.I.C. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from synapse.storage.database import make_tuple_comparison_clause +from synapse.storage.engines import BaseDatabaseEngine + +from tests import unittest + + +def _stub_db_engine(**kwargs) -> BaseDatabaseEngine: + # returns a DatabaseEngine, circumventing the abc mechanism + # any kwargs are set as attributes on the class before instantiating it + t = type( + "TestBaseDatabaseEngine", + (BaseDatabaseEngine,), + dict(BaseDatabaseEngine.__dict__), + ) + # defeat the abc mechanism + t.__abstractmethods__ = set() + for k, v in kwargs.items(): + setattr(t, k, v) + return t(None, None) + + +class TupleComparisonClauseTestCase(unittest.TestCase): + def test_native_tuple_comparison(self): + db_engine = _stub_db_engine(supports_tuple_comparison=True) + clause, args = make_tuple_comparison_clause(db_engine, [("a", 1), ("b", 2)]) + self.assertEqual(clause, "(a,b) > (?,?)") + self.assertEqual(args, [1, 2]) + + def test_emulated_tuple_comparison(self): + db_engine = _stub_db_engine(supports_tuple_comparison=False) + clause, args = make_tuple_comparison_clause( + db_engine, [("a", 1), ("b", 2), ("c", 3)] + ) + self.assertEqual( + clause, "(a >= ? AND (a > ? OR (b >= ? AND (b > ? OR c > ?))))" + ) + self.assertEqual(args, [1, 1, 2, 2, 3])