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PyTaxonomies
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chg: Use poetry, typing

pull/6/head
Raphaël Vinot 2020-02-17 19:15:39 +01:00
parent e37f59edf9
commit a151f4ff2e
11 changed files with 688 additions and 378 deletions
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3
.gitignore vendored
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@ -5,3 +5,6 @@ pytaxonomies.egg-info
*.pyc
.ipynb_checkpoints
.coverage
.mypy_cache

14
.travis.yml
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@ -7,15 +7,17 @@ python:
- "3.6-dev"
- "3.7"
- "3.7-dev"
- "nightly"
- "3.8"
- "3.8-dev"
install:
- pip install pipenv
- pipenv install -d
- pip install poetry
- poetry install -E webui -E remote
script:
- pipenv run nosetests-3.4 --with-coverage --cover-package=pytaxonomies -d
- poetry run nosetests-3.4 --with-coverage --cover-package=pytaxonomies -d
- poetry run mypy --no-strict-optional pytaxonomies
after_success:
- pipenv run codecov
- pipenv run coveralls
- poetry run codecov
- poetry run coveralls

18
Pipfile
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@ -1,18 +0,0 @@
[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true
[dev-packages]
coveralls = "*"
codecov = "*"
jsonschema = "*"
nose = "*"
[packages]
pytaxonomies = {editable = true,path = "."}
flask-nav = "*"
Flask = "*"
Flask-Bootstrap = "*"
Flask-WTF = "*"
Jinja2 = ">=2.10.1" # CVE-2019-10906

324
Pipfile.lock generated
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@ -1,324 +0,0 @@
{
"_meta": {
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589
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53
pyproject.toml Normal file
View File

@ -0,0 +1,53 @@
[tool.poetry]
name = "pytaxonomies"
version = "0.6"
description = "Python API for the taxonomies."
authors = ["Raphaël Vinot <raphael.vinot@circl.lu>"]
license = "BSD-3-Clause"
repository = "https://github.com/MISP/PyTaxonomies"
readme = "README.md"
classifiers=[
'License :: OSI Approved :: BSD License',
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Science/Research',
'Intended Audience :: Telecommunications Industry',
'Programming Language :: Python',
'Topic :: Security',
'Topic :: Internet',
]
include = ["pytaxonomies/data/misp-taxonomies/schema.json",
"pytaxonomies/data/misp-taxonomies/MANIFEST.json",
"pytaxonomies/data/misp-taxonomies/*/machinetag.json"]
[tool.poetry.scripts]
pytaxonomies = 'bin/pytaxonomies'
[tool.poetry.dependencies]
python = "^3.6"
requests = { version = "^2.22.0", optional = true }
flask-nav = {version = "^0.6", optional = true}
Flask = {version = "^1.1.1", optional = true}
Flask-Bootstrap = {version = "^3.3.7", optional = true}
Flask-WTF = {version = "^0.14.3", optional = true}
[tool.poetry.extras]
webui = ["flask-nav", "Flask", "Flask-Bootstrap", "Flask-WTF"]
remote = ["requests"]
[tool.poetry.dev-dependencies]
coveralls = "^1.11.1"
codecov = "^2.0.15"
jsonschema = "^3.2.0"
nose = "^1.3.7"
mypy = "^0.761"
[build-system]
requires = ["poetry>=0.12"]
build-backend = "poetry.masonry.api"

48
pytaxonomies/api.py
View File

@ -7,6 +7,8 @@ import collections
import re
import sys
from json import JSONEncoder
from pathlib import Path
from typing import Union, Dict, Optional, List, Callable, Any
try:
import requests
@ -15,7 +17,7 @@ except ImportError:
HAS_REQUESTS = False
try:
import jsonschema
import jsonschema # type: ignore
HAS_JSONSCHEMA = True
except ImportError:
HAS_JSONSCHEMA = False
@ -30,7 +32,7 @@ class EncodeTaxonomies(JSONEncoder):
class Entry():
def __init__(self, entry=None):
def __init__(self, entry: Optional[Dict[str, str]]=None):
if not entry:
# We're creating a new one
self.expanded = None
@ -44,7 +46,7 @@ class Entry():
self.description = entry.get('description')
self.numerical_value = entry.get('numerical_value')
def to_dict(self):
def to_dict(self) -> Dict[str, str]:
to_return = {'value': self.value}
if self.expanded:
to_return['expanded'] = self.expanded
@ -56,7 +58,7 @@ class Entry():
to_return['numerical_value'] = self.numerical_value
return to_return
def to_json(self):
def to_json(self) -> str:
return json.dumps(self, cls=EncodeTaxonomies)
def __str__(self):
@ -65,7 +67,8 @@ class Entry():
class Predicate(collections.Mapping):
def __init__(self, predicate=None, entries=None):
def __init__(self, predicate: Optional[Dict[str, str]]=None,
entries: Optional[List[Dict[str, str]]]=None):
if not predicate and not entries:
# We're creating a new one
self.expanded = None
@ -73,7 +76,7 @@ class Predicate(collections.Mapping):
self.colour = None
self.exclusive = None
self.numerical_value = None
self.entries = {}
self.entries: Dict[str, Entry] = {}
return
self.predicate = predicate['value']
self.expanded = predicate.get('expanded')
@ -83,7 +86,7 @@ class Predicate(collections.Mapping):
self.numerical_value = predicate.get('numerical_value')
self.__init_entries(entries)
def __init_entries(self, entries):
def __init_entries(self, entries: Optional[List[Dict[str, str]]]=None):
self.entries = {}
if entries:
for e in entries:
@ -105,7 +108,7 @@ class Predicate(collections.Mapping):
to_return['entries'] = self.values()
return to_return
def to_json(self):
def to_json(self) -> str:
return json.dumps(self, cls=EncodeTaxonomies)
def __str__(self):
@ -130,7 +133,7 @@ class Taxonomy(collections.Mapping):
self.refs = None
self.type = None
self.exclusive = None
self.predicates = {}
self.predicates: Dict[str, Predicate] = {}
return
self.taxonomy = taxonomy
self.name = self.taxonomy['namespace']
@ -232,11 +235,10 @@ class Taxonomy(collections.Mapping):
class Taxonomies(collections.Mapping):
def __init__(self, manifest_url='https://raw.githubusercontent.com/MISP/misp-taxonomies/master/MANIFEST.json',
manifest_path=os.path.join(os.path.abspath(os.path.dirname(sys.modules['pytaxonomies'].__file__)),
'data', 'misp-taxonomies', 'MANIFEST.json')):
def __init__(self, manifest_url: str='https://raw.githubusercontent.com/MISP/misp-taxonomies/master/MANIFEST.json',
manifest_path: Union[Path, str]=Path(os.path.abspath(os.path.dirname(sys.modules['pytaxonomies'].__file__))) / 'data' / 'misp-taxonomies' / 'MANIFEST.json'):
if manifest_path:
self.loader = self.__load_path
self.loader: Callable[..., Dict[Any, Any]] = self.__load_path
self.manifest = self.loader(manifest_path)
else:
self.loader = self.__load_url
@ -260,17 +262,19 @@ class Taxonomies(collections.Mapping):
for t in self.values():
jsonschema.validate(t.taxonomy, loaded_schema)
def __load_path(self, path):
with open(path, 'r') as f:
def __load_path(self, path: Union[Path, str]) -> Dict:
if isinstance(path, str):
path = Path(path)
with path.open('r') as f:
return json.load(f)
def __load_url(self, url):
def __load_url(self, url: str) -> Dict:
if not HAS_REQUESTS:
raise Exception("Python module 'requests' isn't installed, unable to fetch the taxonomies.")
return requests.get(url).json()
def __make_uri(self, taxonomy_name):
return '{}/{}/{}'.format(self.url, taxonomy_name, self.manifest['path'])
def __make_uri(self, taxonomy_name) -> str:
return f'{self.url}/{taxonomy_name}/{self.manifest["path"]}'
def __init_taxonomies(self):
self.taxonomies = {}
@ -281,7 +285,7 @@ class Taxonomies(collections.Mapping):
if t['name'] != self.taxonomies[t['name']].name:
raise Exception("The name of the taxonomy in the manifest ({}) doesn't match with the name in the taxonomy ({})".format(t['name'], self.taxonomies[t['name']].name))
def __getitem__(self, name):
def __getitem__(self, name: str):
return self.taxonomies[name]
def __iter__(self):
@ -296,7 +300,7 @@ class Taxonomies(collections.Mapping):
to_print += "{}\n\n".format(str(taxonomy))
return to_print
def search(self, query, expanded=False):
def search(self, query: str, expanded: bool=False) -> List:
query = query.lower()
to_return = []
for taxonomy in self.values():
@ -311,7 +315,7 @@ class Taxonomies(collections.Mapping):
to_return.append(mt)
return to_return
def revert_machinetag(self, machinetag):
def revert_machinetag(self, machinetag: str):
if '=' in machinetag:
name, predicat, entry = re.findall('^([^:]*):([^=]*)="([^"]*)"$', machinetag)[0]
else:
@ -322,7 +326,7 @@ class Taxonomies(collections.Mapping):
else:
return self.taxonomies[name], self.taxonomies[name][predicat]
def all_machinetags(self, expanded=False):
def all_machinetags(self, expanded: bool=False):
if expanded:
return [taxonomy.machinetags_expanded() for taxonomy in self.values()]
return [taxonomy.machinetags() for taxonomy in self.values()]

0
pytaxonomies/py.typed Normal file
View File

2
setup.py
View File

@ -1,6 +1,6 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from setuptools import setup
from setuptools import setup # type: ignore
setup(

1
tests/tests.py
View File

@ -10,6 +10,7 @@ import pytaxonomies.api
class TestPyTaxonomies(unittest.TestCase):
def setUp(self):
self.maxDiff = None
self.taxonomies_offline = Taxonomies()
self.loaded_tax = {}
for t in self.taxonomies_offline.manifest['taxonomies']:

14
website/__init__.py
View File

@ -2,12 +2,12 @@
# -*- coding: utf-8 -*-
from flask import Flask, request, render_template
from flask_bootstrap import Bootstrap
from flask_nav import Nav
from flask_nav.elements import Navbar, View
from flask_wtf import FlaskForm
from wtforms import StringField, SubmitField
from wtforms.validators import DataRequired
from flask_bootstrap import Bootstrap # type: ignore
from flask_nav import Nav # type: ignore
from flask_nav.elements import Navbar, View # type: ignore
from flask_wtf import FlaskForm # type: ignore
from wtforms import StringField, SubmitField # type: ignore
from wtforms.validators import DataRequired # type: ignore
from pytaxonomies import Taxonomies
@ -30,7 +30,7 @@ app.config['BOOTSTRAP_SERVE_LOCAL'] = True
app.debug = True
nav.init_app(app)
#t = Taxonomies(manifest_path="../../misp-taxonomies/MANIFEST.json")
# t = Taxonomies(manifest_path="../../misp-taxonomies/MANIFEST.json")
t = Taxonomies()