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PyTaxonomies
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chg: Use poetry, typing

pull/6/head
Raphaël Vinot 2020-02-17 19:15:39 +01:00
parent e37f59edf9
commit a151f4ff2e
11 changed files with 688 additions and 378 deletions
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3
.gitignore vendored
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@ -5,3 +5,6 @@ pytaxonomies.egg-info
*.pyc *.pyc
.ipynb_checkpoints .ipynb_checkpoints
.coverage
.mypy_cache

14
.travis.yml
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@ -7,15 +7,17 @@ python:
- "3.6-dev" - "3.6-dev"
- "3.7" - "3.7"
- "3.7-dev" - "3.7-dev"
- "nightly" - "3.8"
- "3.8-dev"
install: install:
- pip install pipenv - pip install poetry
- pipenv install -d - poetry install -E webui -E remote
script: script:
- pipenv run nosetests-3.4 --with-coverage --cover-package=pytaxonomies -d - poetry run nosetests-3.4 --with-coverage --cover-package=pytaxonomies -d
- poetry run mypy --no-strict-optional pytaxonomies
after_success: after_success:
- pipenv run codecov - poetry run codecov
- pipenv run coveralls - poetry run coveralls

18
Pipfile
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@ -1,18 +0,0 @@
[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true
[dev-packages]
coveralls = "*"
codecov = "*"
jsonschema = "*"
nose = "*"
[packages]
pytaxonomies = {editable = true,path = "."}
flask-nav = "*"
Flask = "*"
Flask-Bootstrap = "*"
Flask-WTF = "*"
Jinja2 = ">=2.10.1" # CVE-2019-10906

324
Pipfile.lock generated
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@ -1,324 +0,0 @@
{
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589
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@ -0,0 +1,589 @@
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53
pyproject.toml Normal file
View File

@ -0,0 +1,53 @@
[tool.poetry]
name = "pytaxonomies"
version = "0.6"
description = "Python API for the taxonomies."
authors = ["Raphaël Vinot <raphael.vinot@circl.lu>"]
license = "BSD-3-Clause"
repository = "https://github.com/MISP/PyTaxonomies"
readme = "README.md"
classifiers=[
'License :: OSI Approved :: BSD License',
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Science/Research',
'Intended Audience :: Telecommunications Industry',
'Programming Language :: Python',
'Topic :: Security',
'Topic :: Internet',
]
include = ["pytaxonomies/data/misp-taxonomies/schema.json",
"pytaxonomies/data/misp-taxonomies/MANIFEST.json",
"pytaxonomies/data/misp-taxonomies/*/machinetag.json"]
[tool.poetry.scripts]
pytaxonomies = 'bin/pytaxonomies'
[tool.poetry.dependencies]
python = "^3.6"
requests = { version = "^2.22.0", optional = true }
flask-nav = {version = "^0.6", optional = true}
Flask = {version = "^1.1.1", optional = true}
Flask-Bootstrap = {version = "^3.3.7", optional = true}
Flask-WTF = {version = "^0.14.3", optional = true}
[tool.poetry.extras]
webui = ["flask-nav", "Flask", "Flask-Bootstrap", "Flask-WTF"]
remote = ["requests"]
[tool.poetry.dev-dependencies]
coveralls = "^1.11.1"
codecov = "^2.0.15"
jsonschema = "^3.2.0"
nose = "^1.3.7"
mypy = "^0.761"
[build-system]
requires = ["poetry>=0.12"]
build-backend = "poetry.masonry.api"

48
pytaxonomies/api.py
View File

@ -7,6 +7,8 @@ import collections
import re import re
import sys import sys
from json import JSONEncoder from json import JSONEncoder
from pathlib import Path
from typing import Union, Dict, Optional, List, Callable, Any
try: try:
import requests import requests
@ -15,7 +17,7 @@ except ImportError:
HAS_REQUESTS = False HAS_REQUESTS = False
try: try:
import jsonschema import jsonschema # type: ignore
HAS_JSONSCHEMA = True HAS_JSONSCHEMA = True
except ImportError: except ImportError:
HAS_JSONSCHEMA = False HAS_JSONSCHEMA = False
@ -30,7 +32,7 @@ class EncodeTaxonomies(JSONEncoder):
class Entry(): class Entry():
def __init__(self, entry=None): def __init__(self, entry: Optional[Dict[str, str]]=None):
if not entry: if not entry:
# We're creating a new one # We're creating a new one
self.expanded = None self.expanded = None
@ -44,7 +46,7 @@ class Entry():
self.description = entry.get('description') self.description = entry.get('description')
self.numerical_value = entry.get('numerical_value') self.numerical_value = entry.get('numerical_value')
def to_dict(self): def to_dict(self) -> Dict[str, str]:
to_return = {'value': self.value} to_return = {'value': self.value}
if self.expanded: if self.expanded:
to_return['expanded'] = self.expanded to_return['expanded'] = self.expanded
@ -56,7 +58,7 @@ class Entry():
to_return['numerical_value'] = self.numerical_value to_return['numerical_value'] = self.numerical_value
return to_return return to_return
def to_json(self): def to_json(self) -> str:
return json.dumps(self, cls=EncodeTaxonomies) return json.dumps(self, cls=EncodeTaxonomies)
def __str__(self): def __str__(self):
@ -65,7 +67,8 @@ class Entry():
class Predicate(collections.Mapping): class Predicate(collections.Mapping):
def __init__(self, predicate=None, entries=None): def __init__(self, predicate: Optional[Dict[str, str]]=None,
entries: Optional[List[Dict[str, str]]]=None):
if not predicate and not entries: if not predicate and not entries:
# We're creating a new one # We're creating a new one
self.expanded = None self.expanded = None
@ -73,7 +76,7 @@ class Predicate(collections.Mapping):
self.colour = None self.colour = None
self.exclusive = None self.exclusive = None
self.numerical_value = None self.numerical_value = None
self.entries = {} self.entries: Dict[str, Entry] = {}
return return
self.predicate = predicate['value'] self.predicate = predicate['value']
self.expanded = predicate.get('expanded') self.expanded = predicate.get('expanded')
@ -83,7 +86,7 @@ class Predicate(collections.Mapping):
self.numerical_value = predicate.get('numerical_value') self.numerical_value = predicate.get('numerical_value')
self.__init_entries(entries) self.__init_entries(entries)
def __init_entries(self, entries): def __init_entries(self, entries: Optional[List[Dict[str, str]]]=None):
self.entries = {} self.entries = {}
if entries: if entries:
for e in entries: for e in entries:
@ -105,7 +108,7 @@ class Predicate(collections.Mapping):
to_return['entries'] = self.values() to_return['entries'] = self.values()
return to_return return to_return
def to_json(self): def to_json(self) -> str:
return json.dumps(self, cls=EncodeTaxonomies) return json.dumps(self, cls=EncodeTaxonomies)
def __str__(self): def __str__(self):
@ -130,7 +133,7 @@ class Taxonomy(collections.Mapping):
self.refs = None self.refs = None
self.type = None self.type = None
self.exclusive = None self.exclusive = None
self.predicates = {} self.predicates: Dict[str, Predicate] = {}
return return
self.taxonomy = taxonomy self.taxonomy = taxonomy
self.name = self.taxonomy['namespace'] self.name = self.taxonomy['namespace']
@ -232,11 +235,10 @@ class Taxonomy(collections.Mapping):
class Taxonomies(collections.Mapping): class Taxonomies(collections.Mapping):
def __init__(self, manifest_url='https://raw.githubusercontent.com/MISP/misp-taxonomies/master/MANIFEST.json', def __init__(self, manifest_url: str='https://raw.githubusercontent.com/MISP/misp-taxonomies/master/MANIFEST.json',
manifest_path=os.path.join(os.path.abspath(os.path.dirname(sys.modules['pytaxonomies'].__file__)), manifest_path: Union[Path, str]=Path(os.path.abspath(os.path.dirname(sys.modules['pytaxonomies'].__file__))) / 'data' / 'misp-taxonomies' / 'MANIFEST.json'):
'data', 'misp-taxonomies', 'MANIFEST.json')):
if manifest_path: if manifest_path:
self.loader = self.__load_path self.loader: Callable[..., Dict[Any, Any]] = self.__load_path
self.manifest = self.loader(manifest_path) self.manifest = self.loader(manifest_path)
else: else:
self.loader = self.__load_url self.loader = self.__load_url
@ -260,17 +262,19 @@ class Taxonomies(collections.Mapping):
for t in self.values(): for t in self.values():
jsonschema.validate(t.taxonomy, loaded_schema) jsonschema.validate(t.taxonomy, loaded_schema)
def __load_path(self, path): def __load_path(self, path: Union[Path, str]) -> Dict:
with open(path, 'r') as f: if isinstance(path, str):
path = Path(path)
with path.open('r') as f:
return json.load(f) return json.load(f)
def __load_url(self, url): def __load_url(self, url: str) -> Dict:
if not HAS_REQUESTS: if not HAS_REQUESTS:
raise Exception("Python module 'requests' isn't installed, unable to fetch the taxonomies.") raise Exception("Python module 'requests' isn't installed, unable to fetch the taxonomies.")
return requests.get(url).json() return requests.get(url).json()
def __make_uri(self, taxonomy_name): def __make_uri(self, taxonomy_name) -> str:
return '{}/{}/{}'.format(self.url, taxonomy_name, self.manifest['path']) return f'{self.url}/{taxonomy_name}/{self.manifest["path"]}'
def __init_taxonomies(self): def __init_taxonomies(self):
self.taxonomies = {} self.taxonomies = {}
@ -281,7 +285,7 @@ class Taxonomies(collections.Mapping):
if t['name'] != self.taxonomies[t['name']].name: if t['name'] != self.taxonomies[t['name']].name:
raise Exception("The name of the taxonomy in the manifest ({}) doesn't match with the name in the taxonomy ({})".format(t['name'], self.taxonomies[t['name']].name)) raise Exception("The name of the taxonomy in the manifest ({}) doesn't match with the name in the taxonomy ({})".format(t['name'], self.taxonomies[t['name']].name))
def __getitem__(self, name): def __getitem__(self, name: str):
return self.taxonomies[name] return self.taxonomies[name]
def __iter__(self): def __iter__(self):
@ -296,7 +300,7 @@ class Taxonomies(collections.Mapping):
to_print += "{}\n\n".format(str(taxonomy)) to_print += "{}\n\n".format(str(taxonomy))
return to_print return to_print
def search(self, query, expanded=False): def search(self, query: str, expanded: bool=False) -> List:
query = query.lower() query = query.lower()
to_return = [] to_return = []
for taxonomy in self.values(): for taxonomy in self.values():
@ -311,7 +315,7 @@ class Taxonomies(collections.Mapping):
to_return.append(mt) to_return.append(mt)
return to_return return to_return
def revert_machinetag(self, machinetag): def revert_machinetag(self, machinetag: str):
if '=' in machinetag: if '=' in machinetag:
name, predicat, entry = re.findall('^([^:]*):([^=]*)="([^"]*)"$', machinetag)[0] name, predicat, entry = re.findall('^([^:]*):([^=]*)="([^"]*)"$', machinetag)[0]
else: else:
@ -322,7 +326,7 @@ class Taxonomies(collections.Mapping):
else: else:
return self.taxonomies[name], self.taxonomies[name][predicat] return self.taxonomies[name], self.taxonomies[name][predicat]
def all_machinetags(self, expanded=False): def all_machinetags(self, expanded: bool=False):
if expanded: if expanded:
return [taxonomy.machinetags_expanded() for taxonomy in self.values()] return [taxonomy.machinetags_expanded() for taxonomy in self.values()]
return [taxonomy.machinetags() for taxonomy in self.values()] return [taxonomy.machinetags() for taxonomy in self.values()]

0
pytaxonomies/py.typed Normal file
View File

2
setup.py
View File

@ -1,6 +1,6 @@
#!/usr/bin/env python #!/usr/bin/env python
# -*- coding: utf-8 -*- # -*- coding: utf-8 -*-
from setuptools import setup from setuptools import setup # type: ignore
setup( setup(

1
tests/tests.py
View File

@ -10,6 +10,7 @@ import pytaxonomies.api
class TestPyTaxonomies(unittest.TestCase): class TestPyTaxonomies(unittest.TestCase):
def setUp(self): def setUp(self):
self.maxDiff = None
self.taxonomies_offline = Taxonomies() self.taxonomies_offline = Taxonomies()
self.loaded_tax = {} self.loaded_tax = {}
for t in self.taxonomies_offline.manifest['taxonomies']: for t in self.taxonomies_offline.manifest['taxonomies']:

14
website/__init__.py
View File

@ -2,12 +2,12 @@
# -*- coding: utf-8 -*- # -*- coding: utf-8 -*-
from flask import Flask, request, render_template from flask import Flask, request, render_template
from flask_bootstrap import Bootstrap from flask_bootstrap import Bootstrap # type: ignore
from flask_nav import Nav from flask_nav import Nav # type: ignore
from flask_nav.elements import Navbar, View from flask_nav.elements import Navbar, View # type: ignore
from flask_wtf import FlaskForm from flask_wtf import FlaskForm # type: ignore
from wtforms import StringField, SubmitField from wtforms import StringField, SubmitField # type: ignore
from wtforms.validators import DataRequired from wtforms.validators import DataRequired # type: ignore
from pytaxonomies import Taxonomies from pytaxonomies import Taxonomies
@ -30,7 +30,7 @@ app.config['BOOTSTRAP_SERVE_LOCAL'] = True
app.debug = True app.debug = True
nav.init_app(app) nav.init_app(app)
#t = Taxonomies(manifest_path="../../misp-taxonomies/MANIFEST.json") # t = Taxonomies(manifest_path="../../misp-taxonomies/MANIFEST.json")
t = Taxonomies() t = Taxonomies()