* new packages for graph and object-based semantic equivalence
* new method graphically_equivalent for Environment, move equivalence methods out
* object equivalence function, methods used for object-based moved here.
* new graph_equivalence methods
* add notes
* add support for versioning checks (default disabled)
* new tests to cover graph equivalence and new methods
* added more imports to environment.py to prevent breaking changes
* variable changes, new fields for checks, reset depth check per call
* flexibility when object is not available on graph.
* refactor debug logging message
* new file stix2.equivalence.graph_equivalence.rst and stix2.equivalence.object_equivalence.rst for docs
* API documentation for new modules
* additional text required to build docs
* add more test methods for list_semantic_check an graphically_equivalent/versioning
* add logging debug messages, code clean-up
* include individual scoring on results dict, fix issue on list_semantic_check not keeping highest score
* include results as summary in prop_scores, minor tweaks
* Update __init__.py
doctrings update
* apply feedback from pull request
- rename semantic_check to reference_check
- rename modules to graph and object respectively to eliminate redundancy
- remove created_by_ref and object_marking_refs from graph WEIGHTS and rebalance
* update docs/ entries
* add more checks, make max score based on actual objects checked instead of the full list, only create entry when type is present in WEIGHTS dictionary
update tests to reflect changes
* rename package patterns -> pattern
* documentation, moving weights around
* more documentation moving
* rename WEIGHTS variable for graph_equivalence
Import a bunch of stuff so users can just "from stix2.workbench import *" and
not need to import other stuff (e.g. MarkingDefinition, Cyber Observable
Object classes, etc.) from stix2.
Also remove package and module names from classes and functions.
Also remove stix2.base from docs. We hide all private classes and
functions from the docs, so the only thing the documentation for base
included was STIXJSONEncoder.
Emmanuelle Vargas-Gonzalez